533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/cgilib/dbSnpRs.c src/hg/cgilib/dbSnpRs.c
new file mode 100644
index 0000000..e56a76d
--- /dev/null
+++ src/hg/cgilib/dbSnpRs.c
@@ -0,0 +1,213 @@
+/* dbSnpRs.c was originally generated by the autoSql program, which also 
+ * generated dbSnpRs.h and dbSnpRs.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "dbSnpRs.h"
+
+
+void dbSnpRsStaticLoad(char **row, struct dbSnpRs *ret)
+/* Load a row from dbSnpRs table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->rsId = row[0];
+ret->avHet = atof(row[1]);
+ret->avHetSE = atof(row[2]);
+ret->valid = row[3];
+ret->allele1 = row[4];
+ret->allele2 = row[5];
+ret->assembly = row[6];
+ret->alternate = row[7];
+ret->func = row[8];
+}
+
+struct dbSnpRs *dbSnpRsLoad(char **row)
+/* Load a dbSnpRs from row fetched with select * from dbSnpRs
+ * from database.  Dispose of this with dbSnpRsFree(). */
+{
+struct dbSnpRs *ret;
+
+AllocVar(ret);
+ret->rsId = cloneString(row[0]);
+ret->avHet = atof(row[1]);
+ret->avHetSE = atof(row[2]);
+ret->valid = cloneString(row[3]);
+ret->allele1 = cloneString(row[4]);
+ret->allele2 = cloneString(row[5]);
+ret->assembly = cloneString(row[6]);
+ret->alternate = cloneString(row[7]);
+ret->func = cloneString(row[8]);
+return ret;
+}
+
+struct dbSnpRs *dbSnpRsLoadAll(char *fileName) 
+/* Load all dbSnpRs from a whitespace-separated file.
+ * Dispose of this with dbSnpRsFreeList(). */
+{
+struct dbSnpRs *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[9];
+
+while (lineFileRow(lf, row))
+    {
+    el = dbSnpRsLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct dbSnpRs *dbSnpRsLoadAllByChar(char *fileName, char chopper) 
+/* Load all dbSnpRs from a chopper separated file.
+ * Dispose of this with dbSnpRsFreeList(). */
+{
+struct dbSnpRs *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[9];
+
+while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
+    {
+    el = dbSnpRsLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct dbSnpRs *dbSnpRsLoadByQuery(struct sqlConnection *conn, char *query)
+/* Load all dbSnpRs from table that satisfy the query given.  
+ * Where query is of the form 'select * from example where something=something'
+ * or 'select example.* from example, anotherTable where example.something = 
+ * anotherTable.something'.
+ * Dispose of this with dbSnpRsFreeList(). */
+{
+struct dbSnpRs *list = NULL, *el;
+struct sqlResult *sr;
+char **row;
+
+sr = sqlGetResult(conn, query);
+while ((row = sqlNextRow(sr)) != NULL)
+    {
+    el = dbSnpRsLoad(row);
+    slAddHead(&list, el);
+    }
+slReverse(&list);
+sqlFreeResult(&sr);
+return list;
+}
+
+void dbSnpRsSaveToDb(struct sqlConnection *conn, struct dbSnpRs *el, char *tableName, int updateSize)
+/* Save dbSnpRs as a row to the table specified by tableName. 
+ * As blob fields may be arbitrary size updateSize specifies the approx size
+ * of a string that would contain the entire query. Arrays of native types are
+ * converted to comma separated strings and loaded as such, User defined types are
+ * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
+{
+struct dyString *update = newDyString(updateSize);
+sqlDyStringPrintf(update, "insert into %s values ( '%s',%f,%f,'%s','%s','%s','%s','%s','%s')", 
+	tableName,  el->rsId,  el->avHet,  el->avHetSE,  el->valid,  el->allele1,  el->allele2,  el->assembly,  el->alternate,  el->func);
+sqlUpdate(conn, update->string);
+freeDyString(&update);
+}
+
+
+struct dbSnpRs *dbSnpRsCommaIn(char **pS, struct dbSnpRs *ret)
+/* Create a dbSnpRs out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new dbSnpRs */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->rsId = sqlStringComma(&s);
+ret->avHet = sqlFloatComma(&s);
+ret->avHetSE = sqlFloatComma(&s);
+ret->valid = sqlStringComma(&s);
+ret->allele1 = sqlStringComma(&s);
+ret->allele2 = sqlStringComma(&s);
+ret->assembly = sqlStringComma(&s);
+ret->alternate = sqlStringComma(&s);
+ret->func = sqlStringComma(&s);
+*pS = s;
+return ret;
+}
+
+void dbSnpRsFree(struct dbSnpRs **pEl)
+/* Free a single dynamically allocated dbSnpRs such as created
+ * with dbSnpRsLoad(). */
+{
+struct dbSnpRs *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->rsId);
+freeMem(el->valid);
+freeMem(el->allele1);
+freeMem(el->allele2);
+freeMem(el->assembly);
+freeMem(el->alternate);
+freeMem(el->func);
+freez(pEl);
+}
+
+void dbSnpRsFreeList(struct dbSnpRs **pList)
+/* Free a list of dynamically allocated dbSnpRs's */
+{
+struct dbSnpRs *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    dbSnpRsFree(&el);
+    }
+*pList = NULL;
+}
+
+void dbSnpRsOutput(struct dbSnpRs *el, FILE *f, char sep, char lastSep) 
+/* Print out dbSnpRs.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->rsId);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%f", el->avHet);
+fputc(sep,f);
+fprintf(f, "%f", el->avHetSE);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->valid);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->allele1);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->allele2);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->assembly);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->alternate);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->func);
+if (sep == ',') fputc('"',f);
+fputc(lastSep,f);
+}
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+