533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/cgilib/dgvPlus.c src/hg/cgilib/dgvPlus.c
new file mode 100644
index 0000000..e4566f5
--- /dev/null
+++ src/hg/cgilib/dgvPlus.c
@@ -0,0 +1,258 @@
+/* dgvPlus.c was originally generated by the autoSql program, which also 
+ * generated dgvPlus.h and dgvPlus.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "dgvPlus.h"
+
+
+
+char *dgvPlusCommaSepFieldNames = "chrom,chromStart,chromEnd,name,score,strand,thickStart,thickEnd,itemRgb,varType,reference,pubMedId,method,platform,mergedVariants,supportingVariants,sampleSize,observedGains,observedLosses,cohortDescription,genes,samples";
+
+void dgvPlusStaticLoad(char **row, struct dgvPlus *ret)
+/* Load a row from dgvPlus table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->chrom = row[0];
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = row[3];
+ret->score = sqlUnsigned(row[4]);
+safecpy(ret->strand, sizeof(ret->strand), row[5]);
+ret->thickStart = sqlUnsigned(row[6]);
+ret->thickEnd = sqlUnsigned(row[7]);
+ret->itemRgb = sqlUnsigned(row[8]);
+ret->varType = row[9];
+ret->reference = row[10];
+ret->pubMedId = sqlUnsigned(row[11]);
+ret->method = row[12];
+ret->platform = row[13];
+ret->mergedVariants = row[14];
+ret->supportingVariants = row[15];
+ret->sampleSize = sqlUnsigned(row[16]);
+ret->observedGains = sqlUnsigned(row[17]);
+ret->observedLosses = sqlUnsigned(row[18]);
+ret->cohortDescription = row[19];
+ret->genes = row[20];
+ret->samples = row[21];
+}
+
+struct dgvPlus *dgvPlusLoad(char **row)
+/* Load a dgvPlus from row fetched with select * from dgvPlus
+ * from database.  Dispose of this with dgvPlusFree(). */
+{
+struct dgvPlus *ret;
+
+AllocVar(ret);
+ret->chrom = cloneString(row[0]);
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = cloneString(row[3]);
+ret->score = sqlUnsigned(row[4]);
+safecpy(ret->strand, sizeof(ret->strand), row[5]);
+ret->thickStart = sqlUnsigned(row[6]);
+ret->thickEnd = sqlUnsigned(row[7]);
+ret->itemRgb = sqlUnsigned(row[8]);
+ret->varType = cloneString(row[9]);
+ret->reference = cloneString(row[10]);
+ret->pubMedId = sqlUnsigned(row[11]);
+ret->method = cloneString(row[12]);
+ret->platform = cloneString(row[13]);
+ret->mergedVariants = cloneString(row[14]);
+ret->supportingVariants = cloneString(row[15]);
+ret->sampleSize = sqlUnsigned(row[16]);
+ret->observedGains = sqlUnsigned(row[17]);
+ret->observedLosses = sqlUnsigned(row[18]);
+ret->cohortDescription = cloneString(row[19]);
+ret->genes = cloneString(row[20]);
+ret->samples = cloneString(row[21]);
+return ret;
+}
+
+struct dgvPlus *dgvPlusLoadAll(char *fileName) 
+/* Load all dgvPlus from a whitespace-separated file.
+ * Dispose of this with dgvPlusFreeList(). */
+{
+struct dgvPlus *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[22];
+
+while (lineFileRow(lf, row))
+    {
+    el = dgvPlusLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct dgvPlus *dgvPlusLoadAllByChar(char *fileName, char chopper) 
+/* Load all dgvPlus from a chopper separated file.
+ * Dispose of this with dgvPlusFreeList(). */
+{
+struct dgvPlus *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[22];
+
+while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
+    {
+    el = dgvPlusLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct dgvPlus *dgvPlusCommaIn(char **pS, struct dgvPlus *ret)
+/* Create a dgvPlus out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new dgvPlus */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->chrom = sqlStringComma(&s);
+ret->chromStart = sqlUnsignedComma(&s);
+ret->chromEnd = sqlUnsignedComma(&s);
+ret->name = sqlStringComma(&s);
+ret->score = sqlUnsignedComma(&s);
+sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
+ret->thickStart = sqlUnsignedComma(&s);
+ret->thickEnd = sqlUnsignedComma(&s);
+ret->itemRgb = sqlUnsignedComma(&s);
+ret->varType = sqlStringComma(&s);
+ret->reference = sqlStringComma(&s);
+ret->pubMedId = sqlUnsignedComma(&s);
+ret->method = sqlStringComma(&s);
+ret->platform = sqlStringComma(&s);
+ret->mergedVariants = sqlStringComma(&s);
+ret->supportingVariants = sqlStringComma(&s);
+ret->sampleSize = sqlUnsignedComma(&s);
+ret->observedGains = sqlUnsignedComma(&s);
+ret->observedLosses = sqlUnsignedComma(&s);
+ret->cohortDescription = sqlStringComma(&s);
+ret->genes = sqlStringComma(&s);
+ret->samples = sqlStringComma(&s);
+*pS = s;
+return ret;
+}
+
+void dgvPlusFree(struct dgvPlus **pEl)
+/* Free a single dynamically allocated dgvPlus such as created
+ * with dgvPlusLoad(). */
+{
+struct dgvPlus *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->chrom);
+freeMem(el->name);
+freeMem(el->varType);
+freeMem(el->reference);
+freeMem(el->method);
+freeMem(el->platform);
+freeMem(el->mergedVariants);
+freeMem(el->supportingVariants);
+freeMem(el->cohortDescription);
+freeMem(el->genes);
+freeMem(el->samples);
+freez(pEl);
+}
+
+void dgvPlusFreeList(struct dgvPlus **pList)
+/* Free a list of dynamically allocated dgvPlus's */
+{
+struct dgvPlus *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    dgvPlusFree(&el);
+    }
+*pList = NULL;
+}
+
+void dgvPlusOutput(struct dgvPlus *el, FILE *f, char sep, char lastSep) 
+/* Print out dgvPlus.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->chrom);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->chromStart);
+fputc(sep,f);
+fprintf(f, "%u", el->chromEnd);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->name);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->score);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->strand);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->thickStart);
+fputc(sep,f);
+fprintf(f, "%u", el->thickEnd);
+fputc(sep,f);
+fprintf(f, "%u", el->itemRgb);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->varType);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->reference);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->pubMedId);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->method);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->platform);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->mergedVariants);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->supportingVariants);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->sampleSize);
+fputc(sep,f);
+fprintf(f, "%u", el->observedGains);
+fputc(sep,f);
+fprintf(f, "%u", el->observedLosses);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->cohortDescription);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->genes);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->samples);
+if (sep == ',') fputc('"',f);
+fputc(lastSep,f);
+}
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+