533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/cgilib/dless.c src/hg/cgilib/dless.c
new file mode 100644
index 0000000..a272cb3
--- /dev/null
+++ src/hg/cgilib/dless.c
@@ -0,0 +1,243 @@
+/* dless.c was originally generated by the autoSql program, which also 
+ * generated dless.h and dless.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "dless.h"
+
+
+void dlessStaticLoad(char **row, struct dless *ret)
+/* Load a row from dless table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->chrom = row[0];
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = row[3];
+ret->score = atof(row[4]);
+strcpy(ret->type, row[5]);
+ret->branch = row[6];
+ret->pConsSub = atof(row[7]);
+ret->pConsSup = atof(row[8]);
+ret->pConsSubCond = atof(row[9]);
+ret->pConsSupCond = atof(row[10]);
+strcpy(ret->condApprox, row[11]);
+ret->priorMeanSub = atof(row[12]);
+ret->priorVarSub = atof(row[13]);
+ret->priorMinSub = sqlUnsigned(row[14]);
+ret->priorMaxSub = sqlUnsigned(row[15]);
+ret->postMeanSub = atof(row[16]);
+ret->postVarSub = atof(row[17]);
+ret->priorMeanSup = atof(row[18]);
+ret->priorVarSup = atof(row[19]);
+ret->priorMinSup = sqlUnsigned(row[20]);
+ret->priorMaxSup = sqlUnsigned(row[21]);
+ret->postMeanSup = atof(row[22]);
+ret->postVarSup = atof(row[23]);
+}
+
+struct dless *dlessLoad(char **row)
+/* Load a dless from row fetched with select * from dless
+ * from database.  Dispose of this with dlessFree(). */
+{
+struct dless *ret;
+
+AllocVar(ret);
+ret->chrom = cloneString(row[0]);
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = cloneString(row[3]);
+ret->score = atof(row[4]);
+strcpy(ret->type, row[5]);
+ret->branch = cloneString(row[6]);
+ret->pConsSub = atof(row[7]);
+ret->pConsSup = atof(row[8]);
+ret->pConsSubCond = atof(row[9]);
+ret->pConsSupCond = atof(row[10]);
+strcpy(ret->condApprox, row[11]);
+ret->priorMeanSub = atof(row[12]);
+ret->priorVarSub = atof(row[13]);
+ret->priorMinSub = sqlUnsigned(row[14]);
+ret->priorMaxSub = sqlUnsigned(row[15]);
+ret->postMeanSub = atof(row[16]);
+ret->postVarSub = atof(row[17]);
+ret->priorMeanSup = atof(row[18]);
+ret->priorVarSup = atof(row[19]);
+ret->priorMinSup = sqlUnsigned(row[20]);
+ret->priorMaxSup = sqlUnsigned(row[21]);
+ret->postMeanSup = atof(row[22]);
+ret->postVarSup = atof(row[23]);
+return ret;
+}
+
+struct dless *dlessLoadAll(char *fileName) 
+/* Load all dless from a whitespace-separated file.
+ * Dispose of this with dlessFreeList(). */
+{
+struct dless *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[24];
+
+while (lineFileRow(lf, row))
+    {
+    el = dlessLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct dless *dlessLoadAllByChar(char *fileName, char chopper) 
+/* Load all dless from a chopper separated file.
+ * Dispose of this with dlessFreeList(). */
+{
+struct dless *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[24];
+
+while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
+    {
+    el = dlessLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct dless *dlessCommaIn(char **pS, struct dless *ret)
+/* Create a dless out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new dless */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->chrom = sqlStringComma(&s);
+ret->chromStart = sqlUnsignedComma(&s);
+ret->chromEnd = sqlUnsignedComma(&s);
+ret->name = sqlStringComma(&s);
+ret->score = sqlFloatComma(&s);
+sqlFixedStringComma(&s, ret->type, sizeof(ret->type));
+ret->branch = sqlStringComma(&s);
+ret->pConsSub = sqlFloatComma(&s);
+ret->pConsSup = sqlFloatComma(&s);
+ret->pConsSubCond = sqlFloatComma(&s);
+ret->pConsSupCond = sqlFloatComma(&s);
+sqlFixedStringComma(&s, ret->condApprox, sizeof(ret->condApprox));
+ret->priorMeanSub = sqlFloatComma(&s);
+ret->priorVarSub = sqlFloatComma(&s);
+ret->priorMinSub = sqlUnsignedComma(&s);
+ret->priorMaxSub = sqlUnsignedComma(&s);
+ret->postMeanSub = sqlFloatComma(&s);
+ret->postVarSub = sqlFloatComma(&s);
+ret->priorMeanSup = sqlFloatComma(&s);
+ret->priorVarSup = sqlFloatComma(&s);
+ret->priorMinSup = sqlUnsignedComma(&s);
+ret->priorMaxSup = sqlUnsignedComma(&s);
+ret->postMeanSup = sqlFloatComma(&s);
+ret->postVarSup = sqlFloatComma(&s);
+*pS = s;
+return ret;
+}
+
+void dlessFree(struct dless **pEl)
+/* Free a single dynamically allocated dless such as created
+ * with dlessLoad(). */
+{
+struct dless *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->chrom);
+freeMem(el->name);
+freeMem(el->branch);
+freez(pEl);
+}
+
+void dlessFreeList(struct dless **pList)
+/* Free a list of dynamically allocated dless's */
+{
+struct dless *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    dlessFree(&el);
+    }
+*pList = NULL;
+}
+
+void dlessOutput(struct dless *el, FILE *f, char sep, char lastSep) 
+/* Print out dless.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->chrom);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->chromStart);
+fputc(sep,f);
+fprintf(f, "%u", el->chromEnd);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->name);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%g", el->score);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->type);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->branch);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%g", el->pConsSub);
+fputc(sep,f);
+fprintf(f, "%g", el->pConsSup);
+fputc(sep,f);
+fprintf(f, "%g", el->pConsSubCond);
+fputc(sep,f);
+fprintf(f, "%g", el->pConsSupCond);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->condApprox);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%g", el->priorMeanSub);
+fputc(sep,f);
+fprintf(f, "%g", el->priorVarSub);
+fputc(sep,f);
+fprintf(f, "%u", el->priorMinSub);
+fputc(sep,f);
+fprintf(f, "%u", el->priorMaxSub);
+fputc(sep,f);
+fprintf(f, "%g", el->postMeanSub);
+fputc(sep,f);
+fprintf(f, "%g", el->postVarSub);
+fputc(sep,f);
+fprintf(f, "%g", el->priorMeanSup);
+fputc(sep,f);
+fprintf(f, "%g", el->priorVarSup);
+fputc(sep,f);
+fprintf(f, "%u", el->priorMinSup);
+fputc(sep,f);
+fprintf(f, "%u", el->priorMaxSup);
+fputc(sep,f);
+fprintf(f, "%g", el->postMeanSup);
+fputc(sep,f);
+fprintf(f, "%g", el->postVarSup);
+fputc(lastSep,f);
+}
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+