533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/cgilib/genMapDb.c src/hg/cgilib/genMapDb.c
new file mode 100644
index 0000000..8bbacb0
--- /dev/null
+++ src/hg/cgilib/genMapDb.c
@@ -0,0 +1,221 @@
+/* genMapDb.c was originally generated by the autoSql program, which also 
+ * generated genMapDb.h and genMapDb.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "genMapDb.h"
+
+
+void genMapDbStaticLoad(char **row, struct genMapDb *ret)
+/* Load a row from genMapDb table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->chrom = row[0];
+ret->chromStart = sqlSigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = row[3];
+ret->score = sqlUnsigned(row[4]);
+strcpy(ret->strand, row[5]);
+ret->accT7 = row[6];
+ret->startT7 = sqlUnsigned(row[7]);
+ret->endT7 = sqlUnsigned(row[8]);
+strcpy(ret->strandT7, row[9]);
+ret->accSP6 = row[10];
+ret->startSP6 = sqlUnsigned(row[11]);
+ret->endSP6 = sqlUnsigned(row[12]);
+strcpy(ret->strandSP6, row[13]);
+ret->stsMarker = row[14];
+ret->stsStart = sqlUnsigned(row[15]);
+ret->stsEnd = sqlUnsigned(row[16]);
+}
+
+struct genMapDb *genMapDbLoad(char **row)
+/* Load a genMapDb from row fetched with select * from genMapDb
+ * from database.  Dispose of this with genMapDbFree(). */
+{
+struct genMapDb *ret;
+
+AllocVar(ret);
+ret->chrom = cloneString(row[0]);
+ret->chromStart = sqlSigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = cloneString(row[3]);
+ret->score = sqlUnsigned(row[4]);
+strcpy(ret->strand, row[5]);
+ret->accT7 = cloneString(row[6]);
+ret->startT7 = sqlUnsigned(row[7]);
+ret->endT7 = sqlUnsigned(row[8]);
+strcpy(ret->strandT7, row[9]);
+ret->accSP6 = cloneString(row[10]);
+ret->startSP6 = sqlUnsigned(row[11]);
+ret->endSP6 = sqlUnsigned(row[12]);
+strcpy(ret->strandSP6, row[13]);
+ret->stsMarker = cloneString(row[14]);
+ret->stsStart = sqlUnsigned(row[15]);
+ret->stsEnd = sqlUnsigned(row[16]);
+return ret;
+}
+
+struct genMapDb *genMapDbLoadAll(char *fileName) 
+/* Load all genMapDb from a tab-separated file.
+ * Dispose of this with genMapDbFreeList(). */
+{
+struct genMapDb *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[17];
+
+while (lineFileRow(lf, row))
+    {
+    el = genMapDbLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct genMapDb *genMapDbLoadWhere(struct sqlConnection *conn, char *table, char *where)
+/* Load all genMapDb from table that satisfy where clause. The
+ * where clause may be NULL in which case whole table is loaded
+ * Dispose of this with genMapDbFreeList(). */
+{
+struct genMapDb *list = NULL, *el;
+struct dyString *query = dyStringNew(256);
+struct sqlResult *sr;
+char **row;
+
+sqlDyStringPrintf(query, "select * from %s", table);
+if (where != NULL)
+    dyStringPrintf(query, " where %s", where);
+sr = sqlGetResult(conn, query->string);
+while ((row = sqlNextRow(sr)) != NULL)
+    {
+    el = genMapDbLoad(row);
+    slAddHead(&list, el);
+    }
+slReverse(&list);
+sqlFreeResult(&sr);
+dyStringFree(&query);
+return list;
+}
+
+struct genMapDb *genMapDbCommaIn(char **pS, struct genMapDb *ret)
+/* Create a genMapDb out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new genMapDb */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->chrom = sqlStringComma(&s);
+ret->chromStart = sqlSignedComma(&s);
+ret->chromEnd = sqlUnsignedComma(&s);
+ret->name = sqlStringComma(&s);
+ret->score = sqlUnsignedComma(&s);
+sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
+ret->accT7 = sqlStringComma(&s);
+ret->startT7 = sqlUnsignedComma(&s);
+ret->endT7 = sqlUnsignedComma(&s);
+sqlFixedStringComma(&s, ret->strandT7, sizeof(ret->strandT7));
+ret->accSP6 = sqlStringComma(&s);
+ret->startSP6 = sqlUnsignedComma(&s);
+ret->endSP6 = sqlUnsignedComma(&s);
+sqlFixedStringComma(&s, ret->strandSP6, sizeof(ret->strandSP6));
+ret->stsMarker = sqlStringComma(&s);
+ret->stsStart = sqlUnsignedComma(&s);
+ret->stsEnd = sqlUnsignedComma(&s);
+*pS = s;
+return ret;
+}
+
+void genMapDbFree(struct genMapDb **pEl)
+/* Free a single dynamically allocated genMapDb such as created
+ * with genMapDbLoad(). */
+{
+struct genMapDb *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->chrom);
+freeMem(el->name);
+freeMem(el->accT7);
+freeMem(el->accSP6);
+freeMem(el->stsMarker);
+freez(pEl);
+}
+
+void genMapDbFreeList(struct genMapDb **pList)
+/* Free a list of dynamically allocated genMapDb's */
+{
+struct genMapDb *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    genMapDbFree(&el);
+    }
+*pList = NULL;
+}
+
+void genMapDbOutput(struct genMapDb *el, FILE *f, char sep, char lastSep) 
+/* Print out genMapDb.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->chrom);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%d", el->chromStart);
+fputc(sep,f);
+fprintf(f, "%u", el->chromEnd);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->name);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->score);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->strand);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->accT7);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->startT7);
+fputc(sep,f);
+fprintf(f, "%u", el->endT7);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->strandT7);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->accSP6);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->startSP6);
+fputc(sep,f);
+fprintf(f, "%u", el->endSP6);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->strandSP6);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->stsMarker);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->stsStart);
+fputc(sep,f);
+fprintf(f, "%u", el->stsEnd);
+fputc(lastSep,f);
+}
+