533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/cgilib/kg1ToKg2.c src/hg/cgilib/kg1ToKg2.c new file mode 100644 index 0000000..d712373 --- /dev/null +++ src/hg/cgilib/kg1ToKg2.c @@ -0,0 +1,160 @@ +/* kg1ToKg2.c was originally generated by the autoSql program, which also + * generated kg1ToKg2.h and kg1ToKg2.sql. This module links the database and + * the RAM representation of objects. */ + +/* Copyright (C) 2014 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + +#include "common.h" +#include "linefile.h" +#include "dystring.h" +#include "jksql.h" +#include "kg1ToKg2.h" + + +void kg1ToKg2StaticLoad(char **row, struct kg1ToKg2 *ret) +/* Load a row from kg1ToKg2 table into ret. The contents of ret will + * be replaced at the next call to this function. */ +{ + +ret->oldId = row[0]; +ret->oldChrom = row[1]; +ret->oldStart = sqlSigned(row[2]); +ret->oldEnd = sqlSigned(row[3]); +ret->newId = row[4]; +ret->status = row[5]; +ret->note = row[6]; +} + +struct kg1ToKg2 *kg1ToKg2Load(char **row) +/* Load a kg1ToKg2 from row fetched with select * from kg1ToKg2 + * from database. Dispose of this with kg1ToKg2Free(). */ +{ +struct kg1ToKg2 *ret; + +AllocVar(ret); +ret->oldId = cloneString(row[0]); +ret->oldChrom = cloneString(row[1]); +ret->oldStart = sqlSigned(row[2]); +ret->oldEnd = sqlSigned(row[3]); +ret->newId = cloneString(row[4]); +ret->status = cloneString(row[5]); +ret->note = cloneString(row[6]); +return ret; +} + +struct kg1ToKg2 *kg1ToKg2LoadAll(char *fileName) +/* Load all kg1ToKg2 from a whitespace-separated file. + * Dispose of this with kg1ToKg2FreeList(). */ +{ +struct kg1ToKg2 *list = NULL, *el; +struct lineFile *lf = lineFileOpen(fileName, TRUE); +char *row[7]; + +while (lineFileRow(lf, row)) + { + el = kg1ToKg2Load(row); + slAddHead(&list, el); + } +lineFileClose(&lf); +slReverse(&list); +return list; +} + +struct kg1ToKg2 *kg1ToKg2LoadAllByChar(char *fileName, char chopper) +/* Load all kg1ToKg2 from a chopper separated file. + * Dispose of this with kg1ToKg2FreeList(). */ +{ +struct kg1ToKg2 *list = NULL, *el; +struct lineFile *lf = lineFileOpen(fileName, TRUE); +char *row[7]; + +while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) + { + el = kg1ToKg2Load(row); + slAddHead(&list, el); + } +lineFileClose(&lf); +slReverse(&list); +return list; +} + +struct kg1ToKg2 *kg1ToKg2CommaIn(char **pS, struct kg1ToKg2 *ret) +/* Create a kg1ToKg2 out of a comma separated string. + * This will fill in ret if non-null, otherwise will + * return a new kg1ToKg2 */ +{ +char *s = *pS; + +if (ret == NULL) + AllocVar(ret); +ret->oldId = sqlStringComma(&s); +ret->oldChrom = sqlStringComma(&s); +ret->oldStart = sqlSignedComma(&s); +ret->oldEnd = sqlSignedComma(&s); +ret->newId = sqlStringComma(&s); +ret->status = sqlStringComma(&s); +ret->note = sqlStringComma(&s); +*pS = s; +return ret; +} + +void kg1ToKg2Free(struct kg1ToKg2 **pEl) +/* Free a single dynamically allocated kg1ToKg2 such as created + * with kg1ToKg2Load(). */ +{ +struct kg1ToKg2 *el; + +if ((el = *pEl) == NULL) return; +freeMem(el->oldId); +freeMem(el->oldChrom); +freeMem(el->newId); +freeMem(el->status); +freeMem(el->note); +freez(pEl); +} + +void kg1ToKg2FreeList(struct kg1ToKg2 **pList) +/* Free a list of dynamically allocated kg1ToKg2's */ +{ +struct kg1ToKg2 *el, *next; + +for (el = *pList; el != NULL; el = next) + { + next = el->next; + kg1ToKg2Free(&el); + } +*pList = NULL; +} + +void kg1ToKg2Output(struct kg1ToKg2 *el, FILE *f, char sep, char lastSep) +/* Print out kg1ToKg2. Separate fields with sep. Follow last field with lastSep. */ +{ +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->oldId); +if (sep == ',') fputc('"',f); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->oldChrom); +if (sep == ',') fputc('"',f); +fputc(sep,f); +fprintf(f, "%d", el->oldStart); +fputc(sep,f); +fprintf(f, "%d", el->oldEnd); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->newId); +if (sep == ',') fputc('"',f); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->status); +if (sep == ',') fputc('"',f); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->note); +if (sep == ',') fputc('"',f); +fputc(lastSep,f); +} + +/* -------------------------------- End autoSql Generated Code -------------------------------- */ +