533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/cgilib/rnaPLFold.c src/hg/cgilib/rnaPLFold.c new file mode 100644 index 0000000..58c9a7f --- /dev/null +++ src/hg/cgilib/rnaPLFold.c @@ -0,0 +1,141 @@ +/* rnaPLFold.c was originally generated by the autoSql program, which also + * generated rnaPLFold.h and rnaPLFold.sql. This module links the database and + * the RAM representation of objects. */ + +/* Copyright (C) 2014 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + +#include "common.h" +#include "linefile.h" +#include "dystring.h" +#include "jksql.h" +#include "rnaPLFold.h" + + +void rnaPLFoldStaticLoad(char **row, struct rnaPLFold *ret) +/* Load a row from rnaPLFold table into ret. The contents of ret will + * be replaced at the next call to this function. */ +{ + +ret->chrom = row[0]; +ret->chromStart = sqlUnsigned(row[1]); +ret->chromEnd = sqlUnsigned(row[2]); +ret->span = sqlUnsigned(row[3]); +ret->colorIndex = row[4]; +} + +struct rnaPLFold *rnaPLFoldLoad(char **row) +/* Load a rnaPLFold from row fetched with select * from rnaPLFold + * from database. Dispose of this with rnaPLFoldFree(). */ +{ +struct rnaPLFold *ret; + +AllocVar(ret); +ret->chrom = cloneString(row[0]); +ret->chromStart = sqlUnsigned(row[1]); +ret->chromEnd = sqlUnsigned(row[2]); +ret->span = sqlUnsigned(row[3]); +ret->colorIndex = cloneString(row[4]); +return ret; +} + +struct rnaPLFold *rnaPLFoldLoadAll(char *fileName) +/* Load all rnaPLFold from a whitespace-separated file. + * Dispose of this with rnaPLFoldFreeList(). */ +{ +struct rnaPLFold *list = NULL, *el; +struct lineFile *lf = lineFileOpen(fileName, TRUE); +char *row[5]; + +while (lineFileRow(lf, row)) + { + el = rnaPLFoldLoad(row); + slAddHead(&list, el); + } +lineFileClose(&lf); +slReverse(&list); +return list; +} + +struct rnaPLFold *rnaPLFoldLoadAllByChar(char *fileName, char chopper) +/* Load all rnaPLFold from a chopper separated file. + * Dispose of this with rnaPLFoldFreeList(). */ +{ +struct rnaPLFold *list = NULL, *el; +struct lineFile *lf = lineFileOpen(fileName, TRUE); +char *row[5]; + +while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) + { + el = rnaPLFoldLoad(row); + slAddHead(&list, el); + } +lineFileClose(&lf); +slReverse(&list); +return list; +} + +struct rnaPLFold *rnaPLFoldCommaIn(char **pS, struct rnaPLFold *ret) +/* Create a rnaPLFold out of a comma separated string. + * This will fill in ret if non-null, otherwise will + * return a new rnaPLFold */ +{ +char *s = *pS; + +if (ret == NULL) + AllocVar(ret); +ret->chrom = sqlStringComma(&s); +ret->chromStart = sqlUnsignedComma(&s); +ret->chromEnd = sqlUnsignedComma(&s); +ret->span = sqlUnsignedComma(&s); +ret->colorIndex = sqlStringComma(&s); +*pS = s; +return ret; +} + +void rnaPLFoldFree(struct rnaPLFold **pEl) +/* Free a single dynamically allocated rnaPLFold such as created + * with rnaPLFoldLoad(). */ +{ +struct rnaPLFold *el; + +if ((el = *pEl) == NULL) return; +freeMem(el->chrom); +freeMem(el->colorIndex); +freez(pEl); +} + +void rnaPLFoldFreeList(struct rnaPLFold **pList) +/* Free a list of dynamically allocated rnaPLFold's */ +{ +struct rnaPLFold *el, *next; + +for (el = *pList; el != NULL; el = next) + { + next = el->next; + rnaPLFoldFree(&el); + } +*pList = NULL; +} + +void rnaPLFoldOutput(struct rnaPLFold *el, FILE *f, char sep, char lastSep) +/* Print out rnaPLFold. Separate fields with sep. Follow last field with lastSep. */ +{ +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->chrom); +if (sep == ',') fputc('"',f); +fputc(sep,f); +fprintf(f, "%u", el->chromStart); +fputc(sep,f); +fprintf(f, "%u", el->chromEnd); +fputc(sep,f); +fprintf(f, "%u", el->span); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->colorIndex); +if (sep == ',') fputc('"',f); +fputc(lastSep,f); +} + +/* -------------------------------- End autoSql Generated Code -------------------------------- */ +