533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/cgilib/stsInfoMouse.c src/hg/cgilib/stsInfoMouse.c
new file mode 100644
index 0000000..ed19a1b
--- /dev/null
+++ src/hg/cgilib/stsInfoMouse.c
@@ -0,0 +1,217 @@
+/* stsInfoMouse.c was originally generated by the autoSql program, which also 
+ * generated stsInfoMouse.h and stsInfoMouse.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "stsInfoMouse.h"
+
+
+void stsInfoMouseStaticLoad(char **row, struct stsInfoMouse *ret)
+/* Load a row from stsInfoMouse table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->identNo = sqlUnsigned(row[0]);
+ret->name = row[1];
+ret->MGIPrimerID = sqlUnsigned(row[2]);
+ret->primerName = row[3];
+ret->primerSymbol = row[4];
+ret->primer1 = row[5];
+ret->primer2 = row[6];
+ret->distance = row[7];
+ret->sequence = sqlUnsigned(row[8]);
+ret->MGIMarkerID = sqlUnsigned(row[9]);
+ret->stsMarkerSymbol = row[10];
+ret->Chr = row[11];
+ret->geneticPos = atof(row[12]);
+ret->stsMarkerName = row[13];
+ret->LocusLinkID = sqlUnsigned(row[14]);
+}
+
+struct stsInfoMouse *stsInfoMouseLoad(char **row)
+/* Load a stsInfoMouse from row fetched with select * from stsInfoMouse
+ * from database.  Dispose of this with stsInfoMouseFree(). */
+{
+struct stsInfoMouse *ret;
+
+AllocVar(ret);
+ret->identNo = sqlUnsigned(row[0]);
+ret->name = cloneString(row[1]);
+ret->MGIPrimerID = sqlUnsigned(row[2]);
+ret->primerName = cloneString(row[3]);
+ret->primerSymbol = cloneString(row[4]);
+ret->primer1 = cloneString(row[5]);
+ret->primer2 = cloneString(row[6]);
+ret->distance = cloneString(row[7]);
+ret->sequence = sqlUnsigned(row[8]);
+ret->MGIMarkerID = sqlUnsigned(row[9]);
+ret->stsMarkerSymbol = cloneString(row[10]);
+ret->Chr = cloneString(row[11]);
+ret->geneticPos = atof(row[12]);
+ret->stsMarkerName = cloneString(row[13]);
+ret->LocusLinkID = sqlUnsigned(row[14]);
+return ret;
+}
+
+struct stsInfoMouse *stsInfoMouseLoadAll(char *fileName) 
+/* Load all stsInfoMouse from a tab-separated file.
+ * Dispose of this with stsInfoMouseFreeList(). */
+{
+struct stsInfoMouse *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[15];
+
+while (lineFileRow(lf, row))
+    {
+    el = stsInfoMouseLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct stsInfoMouse *stsInfoMouseLoadWhere(struct sqlConnection *conn, char *table, char *where)
+/* Load all stsInfoMouse from table that satisfy where clause. The
+ * where clause may be NULL in which case whole table is loaded
+ * Dispose of this with stsInfoMouseFreeList(). */
+{
+struct stsInfoMouse *list = NULL, *el;
+struct dyString *query = dyStringNew(256);
+struct sqlResult *sr;
+char **row;
+
+sqlDyStringPrintf(query, "select * from %s", table);
+if (where != NULL)
+    dyStringPrintf(query, " where %s", where);
+sr = sqlGetResult(conn, query->string);
+while ((row = sqlNextRow(sr)) != NULL)
+    {
+    el = stsInfoMouseLoad(row);
+    slAddHead(&list, el);
+    }
+slReverse(&list);
+sqlFreeResult(&sr);
+dyStringFree(&query);
+return list;
+}
+
+struct stsInfoMouse *stsInfoMouseCommaIn(char **pS, struct stsInfoMouse *ret)
+/* Create a stsInfoMouse out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new stsInfoMouse */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->identNo = sqlUnsignedComma(&s);
+ret->name = sqlStringComma(&s);
+ret->MGIPrimerID = sqlUnsignedComma(&s);
+ret->primerName = sqlStringComma(&s);
+ret->primerSymbol = sqlStringComma(&s);
+ret->primer1 = sqlStringComma(&s);
+ret->primer2 = sqlStringComma(&s);
+ret->distance = sqlStringComma(&s);
+ret->sequence = sqlUnsignedComma(&s);
+ret->MGIMarkerID = sqlUnsignedComma(&s);
+ret->stsMarkerSymbol = sqlStringComma(&s);
+ret->Chr = sqlStringComma(&s);
+ret->geneticPos = sqlFloatComma(&s);
+ret->stsMarkerName = sqlStringComma(&s);
+ret->LocusLinkID = sqlUnsignedComma(&s);
+*pS = s;
+return ret;
+}
+
+void stsInfoMouseFree(struct stsInfoMouse **pEl)
+/* Free a single dynamically allocated stsInfoMouse such as created
+ * with stsInfoMouseLoad(). */
+{
+struct stsInfoMouse *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->name);
+freeMem(el->primerName);
+freeMem(el->primerSymbol);
+freeMem(el->primer1);
+freeMem(el->primer2);
+freeMem(el->distance);
+freeMem(el->stsMarkerSymbol);
+freeMem(el->Chr);
+freeMem(el->stsMarkerName);
+freez(pEl);
+}
+
+void stsInfoMouseFreeList(struct stsInfoMouse **pList)
+/* Free a list of dynamically allocated stsInfoMouse's */
+{
+struct stsInfoMouse *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    stsInfoMouseFree(&el);
+    }
+*pList = NULL;
+}
+
+void stsInfoMouseOutput(struct stsInfoMouse *el, FILE *f, char sep, char lastSep) 
+/* Print out stsInfoMouse.  Separate fields with sep. Follow last field with lastSep. */
+{
+fprintf(f, "%u", el->identNo);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->name);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->MGIPrimerID);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->primerName);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->primerSymbol);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->primer1);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->primer2);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->distance);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->sequence);
+fputc(sep,f);
+fprintf(f, "%u", el->MGIMarkerID);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->stsMarkerSymbol);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->Chr);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%f", el->geneticPos);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->stsMarkerName);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->LocusLinkID);
+fputc(lastSep,f);
+}
+