533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/cgilib/stsInfoRat.c src/hg/cgilib/stsInfoRat.c
new file mode 100644
index 0000000..0c3292a
--- /dev/null
+++ src/hg/cgilib/stsInfoRat.c
@@ -0,0 +1,265 @@
+/* stsInfoRat.c was originally generated by the autoSql program, which also 
+ * generated stsInfoRat.h and stsInfoRat.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "stsInfoRat.h"
+
+
+void stsInfoRatStaticLoad(char **row, struct stsInfoRat *ret)
+/* Load a row from stsInfoRat table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->identNo = sqlUnsigned(row[0]);
+ret->name = row[1];
+ret->RGDId = sqlUnsigned(row[2]);
+ret->RGDName = row[3];
+ret->UiStsId = sqlUnsigned(row[4]);
+ret->nameCount = sqlUnsigned(row[5]);
+ret->alias = row[6];
+ret->primer1 = row[7];
+ret->primer2 = row[8];
+ret->distance = row[9];
+ret->sequence = sqlUnsigned(row[10]);
+ret->organis = row[11];
+ret->fhhName = row[12];
+ret->fhhChr = row[13];
+ret->fhhGeneticPos = atof(row[14]);
+ret->shrspName = row[15];
+ret->shrspChr = row[16];
+ret->shrspGeneticPos = atof(row[17]);
+ret->rhName = row[18];
+ret->rhChr = row[19];
+ret->rhGeneticPos = atof(row[20]);
+ret->RHLOD = atof(row[21]);
+ret->GeneName = row[22];
+ret->GeneID = row[23];
+ret->clone = row[24];
+}
+
+struct stsInfoRat *stsInfoRatLoad(char **row)
+/* Load a stsInfoRat from row fetched with select * from stsInfoRat
+ * from database.  Dispose of this with stsInfoRatFree(). */
+{
+struct stsInfoRat *ret;
+
+AllocVar(ret);
+ret->identNo = sqlUnsigned(row[0]);
+ret->name = cloneString(row[1]);
+ret->RGDId = sqlUnsigned(row[2]);
+ret->RGDName = cloneString(row[3]);
+ret->UiStsId = sqlUnsigned(row[4]);
+ret->nameCount = sqlUnsigned(row[5]);
+ret->alias = cloneString(row[6]);
+ret->primer1 = cloneString(row[7]);
+ret->primer2 = cloneString(row[8]);
+ret->distance = cloneString(row[9]);
+ret->sequence = sqlUnsigned(row[10]);
+ret->organis = cloneString(row[11]);
+ret->fhhName = cloneString(row[12]);
+ret->fhhChr = cloneString(row[13]);
+ret->fhhGeneticPos = atof(row[14]);
+ret->shrspName = cloneString(row[15]);
+ret->shrspChr = cloneString(row[16]);
+ret->shrspGeneticPos = atof(row[17]);
+ret->rhName = cloneString(row[18]);
+ret->rhChr = cloneString(row[19]);
+ret->rhGeneticPos = atof(row[20]);
+ret->RHLOD = atof(row[21]);
+ret->GeneName = cloneString(row[22]);
+ret->GeneID = cloneString(row[23]);
+ret->clone = cloneString(row[24]);
+return ret;
+}
+
+struct stsInfoRat *stsInfoRatLoadAll(char *fileName) 
+/* Load all stsInfoRat from a tab-separated file.
+ * Dispose of this with stsInfoRatFreeList(). */
+{
+struct stsInfoRat *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[25];
+
+while (lineFileRow(lf, row))
+    {
+    el = stsInfoRatLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct stsInfoRat *stsInfoRatCommaIn(char **pS, struct stsInfoRat *ret)
+/* Create a stsInfoRat out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new stsInfoRat */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->identNo = sqlUnsignedComma(&s);
+ret->name = sqlStringComma(&s);
+ret->RGDId = sqlUnsignedComma(&s);
+ret->RGDName = sqlStringComma(&s);
+ret->UiStsId = sqlUnsignedComma(&s);
+ret->nameCount = sqlUnsignedComma(&s);
+ret->alias = sqlStringComma(&s);
+ret->primer1 = sqlStringComma(&s);
+ret->primer2 = sqlStringComma(&s);
+ret->distance = sqlStringComma(&s);
+ret->sequence = sqlUnsignedComma(&s);
+ret->organis = sqlStringComma(&s);
+ret->fhhName = sqlStringComma(&s);
+ret->fhhChr = sqlStringComma(&s);
+ret->fhhGeneticPos = sqlFloatComma(&s);
+ret->shrspName = sqlStringComma(&s);
+ret->shrspChr = sqlStringComma(&s);
+ret->shrspGeneticPos = sqlFloatComma(&s);
+ret->rhName = sqlStringComma(&s);
+ret->rhChr = sqlStringComma(&s);
+ret->rhGeneticPos = sqlFloatComma(&s);
+ret->RHLOD = sqlFloatComma(&s);
+ret->GeneName = sqlStringComma(&s);
+ret->GeneID = sqlStringComma(&s);
+ret->clone = sqlStringComma(&s);
+*pS = s;
+return ret;
+}
+
+void stsInfoRatFree(struct stsInfoRat **pEl)
+/* Free a single dynamically allocated stsInfoRat such as created
+ * with stsInfoRatLoad(). */
+{
+struct stsInfoRat *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->name);
+freeMem(el->RGDName);
+freeMem(el->alias);
+freeMem(el->primer1);
+freeMem(el->primer2);
+freeMem(el->distance);
+freeMem(el->organis);
+freeMem(el->fhhName);
+freeMem(el->fhhChr);
+freeMem(el->shrspName);
+freeMem(el->shrspChr);
+freeMem(el->rhName);
+freeMem(el->rhChr);
+freeMem(el->GeneName);
+freeMem(el->GeneID);
+freeMem(el->clone);
+freez(pEl);
+}
+
+void stsInfoRatFreeList(struct stsInfoRat **pList)
+/* Free a list of dynamically allocated stsInfoRat's */
+{
+struct stsInfoRat *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    stsInfoRatFree(&el);
+    }
+*pList = NULL;
+}
+
+void stsInfoRatOutput(struct stsInfoRat *el, FILE *f, char sep, char lastSep) 
+/* Print out stsInfoRat.  Separate fields with sep. Follow last field with lastSep. */
+{
+fprintf(f, "%u", el->identNo);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->name);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->RGDId);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->RGDName);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->UiStsId);
+fputc(sep,f);
+fprintf(f, "%u", el->nameCount);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->alias);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->primer1);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->primer2);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->distance);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->sequence);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->organis);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->fhhName);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->fhhChr);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%f", el->fhhGeneticPos);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->shrspName);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->shrspChr);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%f", el->shrspGeneticPos);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->rhName);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->rhChr);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%f", el->rhGeneticPos);
+fputc(sep,f);
+fprintf(f, "%f", el->RHLOD);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->GeneName);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->GeneID);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->clone);
+if (sep == ',') fputc('"',f);
+fputc(lastSep,f);
+}
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+