533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/cgilib/switchDbTss.c src/hg/cgilib/switchDbTss.c new file mode 100644 index 0000000..efc6072 --- /dev/null +++ src/hg/cgilib/switchDbTss.c @@ -0,0 +1,176 @@ +/* switchDbTss.c was originally generated by the autoSql program, which also + * generated switchDbTss.h and switchDbTss.sql. This module links the database and + * the RAM representation of objects. */ + +/* Copyright (C) 2014 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + +#include "common.h" +#include "linefile.h" +#include "dystring.h" +#include "jksql.h" +#include "switchDbTss.h" + + +void switchDbTssStaticLoad(char **row, struct switchDbTss *ret) +/* Load a row from switchDbTss table into ret. The contents of ret will + * be replaced at the next call to this function. */ +{ + +ret->chrom = row[0]; +ret->chromStart = sqlUnsigned(row[1]); +ret->chromEnd = sqlUnsigned(row[2]); +ret->name = row[3]; +ret->score = sqlUnsigned(row[4]); +safecpy(ret->strand, sizeof(ret->strand), row[5]); +ret->confScore = sqlDouble(row[6]); +ret->gmName = row[7]; +ret->gmChromStart = sqlUnsigned(row[8]); +ret->gmChromEnd = sqlUnsigned(row[9]); +ret->isPseudo = sqlUnsigned(row[10]); +} + +struct switchDbTss *switchDbTssLoad(char **row) +/* Load a switchDbTss from row fetched with select * from switchDbTss + * from database. Dispose of this with switchDbTssFree(). */ +{ +struct switchDbTss *ret; + +AllocVar(ret); +ret->chrom = cloneString(row[0]); +ret->chromStart = sqlUnsigned(row[1]); +ret->chromEnd = sqlUnsigned(row[2]); +ret->name = cloneString(row[3]); +ret->score = sqlUnsigned(row[4]); +safecpy(ret->strand, sizeof(ret->strand), row[5]); +ret->confScore = sqlDouble(row[6]); +ret->gmName = cloneString(row[7]); +ret->gmChromStart = sqlUnsigned(row[8]); +ret->gmChromEnd = sqlUnsigned(row[9]); +ret->isPseudo = sqlUnsigned(row[10]); +return ret; +} + +struct switchDbTss *switchDbTssLoadAll(char *fileName) +/* Load all switchDbTss from a whitespace-separated file. + * Dispose of this with switchDbTssFreeList(). */ +{ +struct switchDbTss *list = NULL, *el; +struct lineFile *lf = lineFileOpen(fileName, TRUE); +char *row[11]; + +while (lineFileRow(lf, row)) + { + el = switchDbTssLoad(row); + slAddHead(&list, el); + } +lineFileClose(&lf); +slReverse(&list); +return list; +} + +struct switchDbTss *switchDbTssLoadAllByChar(char *fileName, char chopper) +/* Load all switchDbTss from a chopper separated file. + * Dispose of this with switchDbTssFreeList(). */ +{ +struct switchDbTss *list = NULL, *el; +struct lineFile *lf = lineFileOpen(fileName, TRUE); +char *row[11]; + +while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) + { + el = switchDbTssLoad(row); + slAddHead(&list, el); + } +lineFileClose(&lf); +slReverse(&list); +return list; +} + +struct switchDbTss *switchDbTssCommaIn(char **pS, struct switchDbTss *ret) +/* Create a switchDbTss out of a comma separated string. + * This will fill in ret if non-null, otherwise will + * return a new switchDbTss */ +{ +char *s = *pS; + +if (ret == NULL) + AllocVar(ret); +ret->chrom = sqlStringComma(&s); +ret->chromStart = sqlUnsignedComma(&s); +ret->chromEnd = sqlUnsignedComma(&s); +ret->name = sqlStringComma(&s); +ret->score = sqlUnsignedComma(&s); +sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand)); +ret->confScore = sqlDoubleComma(&s); +ret->gmName = sqlStringComma(&s); +ret->gmChromStart = sqlUnsignedComma(&s); +ret->gmChromEnd = sqlUnsignedComma(&s); +ret->isPseudo = sqlUnsignedComma(&s); +*pS = s; +return ret; +} + +void switchDbTssFree(struct switchDbTss **pEl) +/* Free a single dynamically allocated switchDbTss such as created + * with switchDbTssLoad(). */ +{ +struct switchDbTss *el; + +if ((el = *pEl) == NULL) return; +freeMem(el->chrom); +freeMem(el->name); +freeMem(el->gmName); +freez(pEl); +} + +void switchDbTssFreeList(struct switchDbTss **pList) +/* Free a list of dynamically allocated switchDbTss's */ +{ +struct switchDbTss *el, *next; + +for (el = *pList; el != NULL; el = next) + { + next = el->next; + switchDbTssFree(&el); + } +*pList = NULL; +} + +void switchDbTssOutput(struct switchDbTss *el, FILE *f, char sep, char lastSep) +/* Print out switchDbTss. Separate fields with sep. Follow last field with lastSep. */ +{ +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->chrom); +if (sep == ',') fputc('"',f); +fputc(sep,f); +fprintf(f, "%u", el->chromStart); +fputc(sep,f); +fprintf(f, "%u", el->chromEnd); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->name); +if (sep == ',') fputc('"',f); +fputc(sep,f); +fprintf(f, "%u", el->score); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->strand); +if (sep == ',') fputc('"',f); +fputc(sep,f); +fprintf(f, "%g", el->confScore); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->gmName); +if (sep == ',') fputc('"',f); +fputc(sep,f); +fprintf(f, "%u", el->gmChromStart); +fputc(sep,f); +fprintf(f, "%u", el->gmChromEnd); +fputc(sep,f); +fprintf(f, "%u", el->isPseudo); +fputc(lastSep,f); +} + +/* -------------------------------- End autoSql Generated Code -------------------------------- */ +