533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/cgilib/transRegCodeProbe.c src/hg/cgilib/transRegCodeProbe.c
new file mode 100644
index 0000000..3acb1f0
--- /dev/null
+++ src/hg/cgilib/transRegCodeProbe.c
@@ -0,0 +1,190 @@
+/* transRegCodeProbe.c was originally generated by the autoSql program, which also 
+ * generated transRegCodeProbe.h and transRegCodeProbe.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "transRegCodeProbe.h"
+
+
+struct transRegCodeProbe *transRegCodeProbeLoad(char **row)
+/* Load a transRegCodeProbe from row fetched with select * from transRegCodeProbe
+ * from database.  Dispose of this with transRegCodeProbeFree(). */
+{
+struct transRegCodeProbe *ret;
+
+AllocVar(ret);
+ret->tfCount = sqlUnsigned(row[4]);
+ret->chrom = cloneString(row[0]);
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = cloneString(row[3]);
+{
+int sizeOne;
+sqlStringDynamicArray(row[5], &ret->tfList, &sizeOne);
+assert(sizeOne == ret->tfCount);
+}
+{
+int sizeOne;
+sqlFloatDynamicArray(row[6], &ret->bindVals, &sizeOne);
+assert(sizeOne == ret->tfCount);
+}
+return ret;
+}
+
+struct transRegCodeProbe *transRegCodeProbeLoadAll(char *fileName) 
+/* Load all transRegCodeProbe from a whitespace-separated file.
+ * Dispose of this with transRegCodeProbeFreeList(). */
+{
+struct transRegCodeProbe *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[7];
+
+while (lineFileRow(lf, row))
+    {
+    el = transRegCodeProbeLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct transRegCodeProbe *transRegCodeProbeLoadAllByChar(char *fileName, char chopper) 
+/* Load all transRegCodeProbe from a chopper separated file.
+ * Dispose of this with transRegCodeProbeFreeList(). */
+{
+struct transRegCodeProbe *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[7];
+
+while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
+    {
+    el = transRegCodeProbeLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct transRegCodeProbe *transRegCodeProbeCommaIn(char **pS, struct transRegCodeProbe *ret)
+/* Create a transRegCodeProbe out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new transRegCodeProbe */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->chrom = sqlStringComma(&s);
+ret->chromStart = sqlUnsignedComma(&s);
+ret->chromEnd = sqlUnsignedComma(&s);
+ret->name = sqlStringComma(&s);
+ret->tfCount = sqlUnsignedComma(&s);
+{
+int i;
+s = sqlEatChar(s, '{');
+AllocArray(ret->tfList, ret->tfCount);
+for (i=0; i<ret->tfCount; ++i)
+    {
+    ret->tfList[i] = sqlStringComma(&s);
+    }
+s = sqlEatChar(s, '}');
+s = sqlEatChar(s, ',');
+}
+{
+int i;
+s = sqlEatChar(s, '{');
+AllocArray(ret->bindVals, ret->tfCount);
+for (i=0; i<ret->tfCount; ++i)
+    {
+    ret->bindVals[i] = sqlFloatComma(&s);
+    }
+s = sqlEatChar(s, '}');
+s = sqlEatChar(s, ',');
+}
+*pS = s;
+return ret;
+}
+
+void transRegCodeProbeFree(struct transRegCodeProbe **pEl)
+/* Free a single dynamically allocated transRegCodeProbe such as created
+ * with transRegCodeProbeLoad(). */
+{
+struct transRegCodeProbe *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->chrom);
+freeMem(el->name);
+/* All strings in tfList are allocated at once, so only need to free first. */
+if (el->tfList != NULL)
+    freeMem(el->tfList[0]);
+freeMem(el->tfList);
+freeMem(el->bindVals);
+freez(pEl);
+}
+
+void transRegCodeProbeFreeList(struct transRegCodeProbe **pList)
+/* Free a list of dynamically allocated transRegCodeProbe's */
+{
+struct transRegCodeProbe *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    transRegCodeProbeFree(&el);
+    }
+*pList = NULL;
+}
+
+void transRegCodeProbeOutput(struct transRegCodeProbe *el, FILE *f, char sep, char lastSep) 
+/* Print out transRegCodeProbe.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->chrom);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->chromStart);
+fputc(sep,f);
+fprintf(f, "%u", el->chromEnd);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->name);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->tfCount);
+fputc(sep,f);
+{
+int i;
+if (sep == ',') fputc('{',f);
+for (i=0; i<el->tfCount; ++i)
+    {
+    if (sep == ',') fputc('"',f);
+    fprintf(f, "%s", el->tfList[i]);
+    if (sep == ',') fputc('"',f);
+    fputc(',', f);
+    }
+if (sep == ',') fputc('}',f);
+}
+fputc(sep,f);
+{
+int i;
+if (sep == ',') fputc('{',f);
+for (i=0; i<el->tfCount; ++i)
+    {
+    fprintf(f, "%g", el->bindVals[i]);
+    fputc(',', f);
+    }
+if (sep == ',') fputc('}',f);
+}
+fputc(lastSep,f);
+}
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+