533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/cgilib/wgRna.c src/hg/cgilib/wgRna.c
new file mode 100644
index 0000000..2386f44
--- /dev/null
+++ src/hg/cgilib/wgRna.c
@@ -0,0 +1,171 @@
+/* wgRna.c was originally generated by the autoSql program, which also 
+ * generated wgRna.h and wgRna.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "wgRna.h"
+
+
+void wgRnaStaticLoad(char **row, struct wgRna *ret)
+/* Load a row from wgRna table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->bin = sqlSigned(row[0]);
+ret->chrom = row[1];
+ret->chromStart = sqlUnsigned(row[2]);
+ret->chromEnd = sqlUnsigned(row[3]);
+ret->name = row[4];
+ret->score = sqlUnsigned(row[5]);
+strcpy(ret->strand, row[6]);
+ret->thickStart = sqlUnsigned(row[7]);
+ret->thickEnd = sqlUnsigned(row[8]);
+ret->type = row[9];
+}
+
+struct wgRna *wgRnaLoad(char **row)
+/* Load a wgRna from row fetched with select * from wgRna
+ * from database.  Dispose of this with wgRnaFree(). */
+{
+struct wgRna *ret;
+
+AllocVar(ret);
+ret->bin = sqlSigned(row[0]);
+ret->chrom = cloneString(row[1]);
+ret->chromStart = sqlUnsigned(row[2]);
+ret->chromEnd = sqlUnsigned(row[3]);
+ret->name = cloneString(row[4]);
+ret->score = sqlUnsigned(row[5]);
+strcpy(ret->strand, row[6]);
+ret->thickStart = sqlUnsigned(row[7]);
+ret->thickEnd = sqlUnsigned(row[8]);
+ret->type = cloneString(row[9]);
+return ret;
+}
+
+struct wgRna *wgRnaLoadAll(char *fileName) 
+/* Load all wgRna from a whitespace-separated file.
+ * Dispose of this with wgRnaFreeList(). */
+{
+struct wgRna *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[10];
+
+while (lineFileRow(lf, row))
+    {
+    el = wgRnaLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct wgRna *wgRnaLoadAllByChar(char *fileName, char chopper) 
+/* Load all wgRna from a chopper separated file.
+ * Dispose of this with wgRnaFreeList(). */
+{
+struct wgRna *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[10];
+
+while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
+    {
+    el = wgRnaLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct wgRna *wgRnaCommaIn(char **pS, struct wgRna *ret)
+/* Create a wgRna out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new wgRna */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->bin = sqlSignedComma(&s);
+ret->chrom = sqlStringComma(&s);
+ret->chromStart = sqlUnsignedComma(&s);
+ret->chromEnd = sqlUnsignedComma(&s);
+ret->name = sqlStringComma(&s);
+ret->score = sqlUnsignedComma(&s);
+sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
+ret->thickStart = sqlUnsignedComma(&s);
+ret->thickEnd = sqlUnsignedComma(&s);
+ret->type = sqlStringComma(&s);
+*pS = s;
+return ret;
+}
+
+void wgRnaFree(struct wgRna **pEl)
+/* Free a single dynamically allocated wgRna such as created
+ * with wgRnaLoad(). */
+{
+struct wgRna *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->chrom);
+freeMem(el->name);
+freeMem(el->type);
+freez(pEl);
+}
+
+void wgRnaFreeList(struct wgRna **pList)
+/* Free a list of dynamically allocated wgRna's */
+{
+struct wgRna *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    wgRnaFree(&el);
+    }
+*pList = NULL;
+}
+
+void wgRnaOutput(struct wgRna *el, FILE *f, char sep, char lastSep) 
+/* Print out wgRna.  Separate fields with sep. Follow last field with lastSep. */
+{
+fprintf(f, "%d", el->bin);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->chrom);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->chromStart);
+fputc(sep,f);
+fprintf(f, "%u", el->chromEnd);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->name);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->score);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->strand);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->thickStart);
+fputc(sep,f);
+fprintf(f, "%u", el->thickEnd);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->type);
+if (sep == ',') fputc('"',f);
+fputc(lastSep,f);
+}
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+