533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/lib/bed8Attrs.c src/hg/lib/bed8Attrs.c deleted file mode 100644 index ea78fd3..0000000 --- src/hg/lib/bed8Attrs.c +++ /dev/null @@ -1,213 +0,0 @@ -/* bed8Attrs.c was originally generated by the autoSql program, which also - * generated bed8Attrs.h and bed8Attrs.sql. This module links the database and - * the RAM representation of objects. */ - -/* Copyright (C) 2014 The Regents of the University of California - * See README in this or parent directory for licensing information. */ - -#include "common.h" -#include "linefile.h" -#include "dystring.h" -#include "jksql.h" -#include "bed8Attrs.h" - - -struct bed8Attrs *bed8AttrsLoad(char **row) -/* Load a bed8Attrs from row fetched with select * from bed8Attrs - * from database. Dispose of this with bed8AttrsFree(). */ -{ -struct bed8Attrs *ret; - -AllocVar(ret); -ret->attrCount = sqlSigned(row[8]); -ret->chrom = cloneString(row[0]); -ret->chromStart = sqlUnsigned(row[1]); -ret->chromEnd = sqlUnsigned(row[2]); -ret->name = cloneString(row[3]); -ret->score = sqlUnsigned(row[4]); -safecpy(ret->strand, sizeof(ret->strand), row[5]); -ret->thickStart = sqlUnsigned(row[6]); -ret->thickEnd = sqlUnsigned(row[7]); -{ -int sizeOne; -sqlStringDynamicArray(row[9], &ret->attrTags, &sizeOne); -assert(sizeOne == ret->attrCount); -} -{ -int sizeOne; -sqlStringDynamicArray(row[10], &ret->attrVals, &sizeOne); -assert(sizeOne == ret->attrCount); -} -return ret; -} - -struct bed8Attrs *bed8AttrsLoadAll(char *fileName) -/* Load all bed8Attrs from a whitespace-separated file. - * Dispose of this with bed8AttrsFreeList(). */ -{ -struct bed8Attrs *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[11]; - -while (lineFileRow(lf, row)) - { - el = bed8AttrsLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct bed8Attrs *bed8AttrsLoadAllByChar(char *fileName, char chopper) -/* Load all bed8Attrs from a chopper separated file. - * Dispose of this with bed8AttrsFreeList(). */ -{ -struct bed8Attrs *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[11]; - -while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) - { - el = bed8AttrsLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct bed8Attrs *bed8AttrsCommaIn(char **pS, struct bed8Attrs *ret) -/* Create a bed8Attrs out of a comma separated string. - * This will fill in ret if non-null, otherwise will - * return a new bed8Attrs */ -{ -char *s = *pS; - -if (ret == NULL) - AllocVar(ret); -ret->chrom = sqlStringComma(&s); -ret->chromStart = sqlUnsignedComma(&s); -ret->chromEnd = sqlUnsignedComma(&s); -ret->name = sqlStringComma(&s); -ret->score = sqlUnsignedComma(&s); -sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand)); -ret->thickStart = sqlUnsignedComma(&s); -ret->thickEnd = sqlUnsignedComma(&s); -ret->attrCount = sqlSignedComma(&s); -{ -int i; -s = sqlEatChar(s, '{'); -AllocArray(ret->attrTags, ret->attrCount); -for (i=0; i<ret->attrCount; ++i) - { - ret->attrTags[i] = sqlStringComma(&s); - } -s = sqlEatChar(s, '}'); -s = sqlEatChar(s, ','); -} -{ -int i; -s = sqlEatChar(s, '{'); -AllocArray(ret->attrVals, ret->attrCount); -for (i=0; i<ret->attrCount; ++i) - { - ret->attrVals[i] = sqlStringComma(&s); - } -s = sqlEatChar(s, '}'); -s = sqlEatChar(s, ','); -} -*pS = s; -return ret; -} - -void bed8AttrsFree(struct bed8Attrs **pEl) -/* Free a single dynamically allocated bed8Attrs such as created - * with bed8AttrsLoad(). */ -{ -struct bed8Attrs *el; - -if ((el = *pEl) == NULL) return; -freeMem(el->chrom); -freeMem(el->name); -/* All strings in attrTags are allocated at once, so only need to free first. */ -if (el->attrTags != NULL) - freeMem(el->attrTags[0]); -freeMem(el->attrTags); -/* All strings in attrVals are allocated at once, so only need to free first. */ -if (el->attrVals != NULL) - freeMem(el->attrVals[0]); -freeMem(el->attrVals); -freez(pEl); -} - -void bed8AttrsFreeList(struct bed8Attrs **pList) -/* Free a list of dynamically allocated bed8Attrs's */ -{ -struct bed8Attrs *el, *next; - -for (el = *pList; el != NULL; el = next) - { - next = el->next; - bed8AttrsFree(&el); - } -*pList = NULL; -} - -void bed8AttrsOutput(struct bed8Attrs *el, FILE *f, char sep, char lastSep) -/* Print out bed8Attrs. Separate fields with sep. Follow last field with lastSep. */ -{ -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->chrom); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->chromStart); -fputc(sep,f); -fprintf(f, "%u", el->chromEnd); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->name); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->score); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->strand); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->thickStart); -fputc(sep,f); -fprintf(f, "%u", el->thickEnd); -fputc(sep,f); -fprintf(f, "%d", el->attrCount); -fputc(sep,f); -{ -int i; -if (sep == ',') fputc('{',f); -for (i=0; i<el->attrCount; ++i) - { - if (sep == ',') fputc('"',f); - fprintf(f, "%s", el->attrTags[i]); - if (sep == ',') fputc('"',f); - fputc(',', f); - } -if (sep == ',') fputc('}',f); -} -fputc(sep,f); -{ -int i; -if (sep == ',') fputc('{',f); -for (i=0; i<el->attrCount; ++i) - { - if (sep == ',') fputc('"',f); - fprintf(f, "%s", el->attrVals[i]); - if (sep == ',') fputc('"',f); - fputc(',', f); - } -if (sep == ',') fputc('}',f); -} -fputc(lastSep,f); -} - -/* -------------------------------- End autoSql Generated Code -------------------------------- */ -