533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/dbRIP.c src/hg/lib/dbRIP.c
deleted file mode 100644
index 034f943..0000000
--- src/hg/lib/dbRIP.c
+++ /dev/null
@@ -1,304 +0,0 @@
-/* dbRIP.c was originally generated by the autoSql program, which also 
- * generated dbRIP.h and dbRIP.sql.  This module links the database and
- * the RAM representation of objects. */
-
-/* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "dbRIP.h"
-
-
-void dbRIPStaticLoad(char **row, struct dbRIP *ret)
-/* Load a row from dbRIP table into ret.  The contents of ret will
- * be replaced at the next call to this function. */
-{
-
-ret->chrom = row[0];
-ret->chromStart = sqlUnsigned(row[1]);
-ret->chromEnd = sqlUnsigned(row[2]);
-ret->name = row[3];
-ret->score = sqlUnsigned(row[4]);
-strcpy(ret->strand, row[5]);
-ret->originalId = row[6];
-ret->forwardPrimer = row[7];
-ret->reversePrimer = row[8];
-ret->polyClass = row[9];
-ret->polyFamily = row[10];
-ret->polySubfamily = row[11];
-ret->polySeq = row[12];
-ret->polySource = row[13];
-ret->reference = row[14];
-ret->ascertainingMethod = row[15];
-ret->remarks = row[16];
-ret->tm = atof(row[17]);
-ret->filledSize = sqlSigned(row[18]);
-ret->emptySize = sqlSigned(row[19]);
-ret->disease = row[20];
-ret->genoRegion = row[21];
-}
-
-struct dbRIP *dbRIPLoad(char **row)
-/* Load a dbRIP from row fetched with select * from dbRIP
- * from database.  Dispose of this with dbRIPFree(). */
-{
-struct dbRIP *ret;
-
-AllocVar(ret);
-ret->chrom = cloneString(row[0]);
-ret->chromStart = sqlUnsigned(row[1]);
-ret->chromEnd = sqlUnsigned(row[2]);
-ret->name = cloneString(row[3]);
-ret->score = sqlUnsigned(row[4]);
-strcpy(ret->strand, row[5]);
-ret->originalId = cloneString(row[6]);
-ret->forwardPrimer = cloneString(row[7]);
-ret->reversePrimer = cloneString(row[8]);
-ret->polyClass = cloneString(row[9]);
-ret->polyFamily = cloneString(row[10]);
-ret->polySubfamily = cloneString(row[11]);
-ret->polySeq = cloneString(row[12]);
-ret->polySource = cloneString(row[13]);
-ret->reference = cloneString(row[14]);
-ret->ascertainingMethod = cloneString(row[15]);
-ret->remarks = cloneString(row[16]);
-ret->tm = atof(row[17]);
-ret->filledSize = sqlSigned(row[18]);
-ret->emptySize = sqlSigned(row[19]);
-ret->disease = cloneString(row[20]);
-ret->genoRegion = cloneString(row[21]);
-return ret;
-}
-
-struct dbRIP *dbRIPLoadAll(char *fileName) 
-/* Load all dbRIP from a whitespace-separated file.
- * Dispose of this with dbRIPFreeList(). */
-{
-struct dbRIP *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[22];
-
-while (lineFileRow(lf, row))
-    {
-    el = dbRIPLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct dbRIP *dbRIPLoadAllByChar(char *fileName, char chopper) 
-/* Load all dbRIP from a chopper separated file.
- * Dispose of this with dbRIPFreeList(). */
-{
-struct dbRIP *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[22];
-
-while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
-    {
-    el = dbRIPLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct dbRIP *dbRIPLoadByQuery(struct sqlConnection *conn, char *query)
-/* Load all dbRIP from table that satisfy the query given.  
- * Where query is of the form 'select * from example where something=something'
- * or 'select example.* from example, anotherTable where example.something = 
- * anotherTable.something'.
- * Dispose of this with dbRIPFreeList(). */
-{
-struct dbRIP *list = NULL, *el;
-struct sqlResult *sr;
-char **row;
-
-sr = sqlGetResult(conn, query);
-while ((row = sqlNextRow(sr)) != NULL)
-    {
-    el = dbRIPLoad(row);
-    slAddHead(&list, el);
-    }
-slReverse(&list);
-sqlFreeResult(&sr);
-return list;
-}
-
-void dbRIPSaveToDb(struct sqlConnection *conn, struct dbRIP *el, char *tableName, int updateSize)
-/* Save dbRIP as a row to the table specified by tableName. 
- * As blob fields may be arbitrary size updateSize specifies the approx size
- * of a string that would contain the entire query. Arrays of native types are
- * converted to comma separated strings and loaded as such, User defined types are
- * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
-{
-struct dyString *update = newDyString(updateSize);
-sqlDyStringPrintf(update, "insert into %s values ( '%s',%u,%u,'%s',%u,'%s','%s','%s','%s','%s','%s','%s',%s,'%s',%s,'%s','%s',%g,%d,%d,'%s','%s')", 
-	tableName,  el->chrom,  el->chromStart,  el->chromEnd,  el->name,  el->score,  el->strand,  el->originalId,  el->forwardPrimer,  el->reversePrimer,  el->polyClass,  el->polyFamily,  el->polySubfamily,  el->polySeq,  el->polySource,  el->reference,  el->ascertainingMethod,  el->remarks,  el->tm,  el->filledSize,  el->emptySize,  el->disease,  el->genoRegion);
-sqlUpdate(conn, update->string);
-freeDyString(&update);
-}
-
-
-struct dbRIP *dbRIPCommaIn(char **pS, struct dbRIP *ret)
-/* Create a dbRIP out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new dbRIP */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->chrom = sqlStringComma(&s);
-ret->chromStart = sqlUnsignedComma(&s);
-ret->chromEnd = sqlUnsignedComma(&s);
-ret->name = sqlStringComma(&s);
-ret->score = sqlUnsignedComma(&s);
-sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
-ret->originalId = sqlStringComma(&s);
-ret->forwardPrimer = sqlStringComma(&s);
-ret->reversePrimer = sqlStringComma(&s);
-ret->polyClass = sqlStringComma(&s);
-ret->polyFamily = sqlStringComma(&s);
-ret->polySubfamily = sqlStringComma(&s);
-ret->polySeq = sqlStringComma(&s);
-ret->polySource = sqlStringComma(&s);
-ret->reference = sqlStringComma(&s);
-ret->ascertainingMethod = sqlStringComma(&s);
-ret->remarks = sqlStringComma(&s);
-ret->tm = sqlFloatComma(&s);
-ret->filledSize = sqlSignedComma(&s);
-ret->emptySize = sqlSignedComma(&s);
-ret->disease = sqlStringComma(&s);
-ret->genoRegion = sqlStringComma(&s);
-*pS = s;
-return ret;
-}
-
-void dbRIPFree(struct dbRIP **pEl)
-/* Free a single dynamically allocated dbRIP such as created
- * with dbRIPLoad(). */
-{
-struct dbRIP *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->chrom);
-freeMem(el->name);
-freeMem(el->originalId);
-freeMem(el->forwardPrimer);
-freeMem(el->reversePrimer);
-freeMem(el->polyClass);
-freeMem(el->polyFamily);
-freeMem(el->polySubfamily);
-freeMem(el->polySeq);
-freeMem(el->polySource);
-freeMem(el->reference);
-freeMem(el->ascertainingMethod);
-freeMem(el->remarks);
-freeMem(el->disease);
-freeMem(el->genoRegion);
-freez(pEl);
-}
-
-void dbRIPFreeList(struct dbRIP **pList)
-/* Free a list of dynamically allocated dbRIP's */
-{
-struct dbRIP *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    dbRIPFree(&el);
-    }
-*pList = NULL;
-}
-
-void dbRIPOutput(struct dbRIP *el, FILE *f, char sep, char lastSep) 
-/* Print out dbRIP.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->chrom);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->chromStart);
-fputc(sep,f);
-fprintf(f, "%u", el->chromEnd);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->name);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->score);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->strand);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->originalId);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->forwardPrimer);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->reversePrimer);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->polyClass);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->polyFamily);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->polySubfamily);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->polySeq);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->polySource);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->reference);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->ascertainingMethod);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->remarks);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%g", el->tm);
-fputc(sep,f);
-fprintf(f, "%d", el->filledSize);
-fputc(sep,f);
-fprintf(f, "%d", el->emptySize);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->disease);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->genoRegion);
-if (sep == ',') fputc('"',f);
-fputc(lastSep,f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-