533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/dgvPlus.c src/hg/lib/dgvPlus.c
deleted file mode 100644
index e4566f5..0000000
--- src/hg/lib/dgvPlus.c
+++ /dev/null
@@ -1,258 +0,0 @@
-/* dgvPlus.c was originally generated by the autoSql program, which also 
- * generated dgvPlus.h and dgvPlus.sql.  This module links the database and
- * the RAM representation of objects. */
-
-/* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "dgvPlus.h"
-
-
-
-char *dgvPlusCommaSepFieldNames = "chrom,chromStart,chromEnd,name,score,strand,thickStart,thickEnd,itemRgb,varType,reference,pubMedId,method,platform,mergedVariants,supportingVariants,sampleSize,observedGains,observedLosses,cohortDescription,genes,samples";
-
-void dgvPlusStaticLoad(char **row, struct dgvPlus *ret)
-/* Load a row from dgvPlus table into ret.  The contents of ret will
- * be replaced at the next call to this function. */
-{
-
-ret->chrom = row[0];
-ret->chromStart = sqlUnsigned(row[1]);
-ret->chromEnd = sqlUnsigned(row[2]);
-ret->name = row[3];
-ret->score = sqlUnsigned(row[4]);
-safecpy(ret->strand, sizeof(ret->strand), row[5]);
-ret->thickStart = sqlUnsigned(row[6]);
-ret->thickEnd = sqlUnsigned(row[7]);
-ret->itemRgb = sqlUnsigned(row[8]);
-ret->varType = row[9];
-ret->reference = row[10];
-ret->pubMedId = sqlUnsigned(row[11]);
-ret->method = row[12];
-ret->platform = row[13];
-ret->mergedVariants = row[14];
-ret->supportingVariants = row[15];
-ret->sampleSize = sqlUnsigned(row[16]);
-ret->observedGains = sqlUnsigned(row[17]);
-ret->observedLosses = sqlUnsigned(row[18]);
-ret->cohortDescription = row[19];
-ret->genes = row[20];
-ret->samples = row[21];
-}
-
-struct dgvPlus *dgvPlusLoad(char **row)
-/* Load a dgvPlus from row fetched with select * from dgvPlus
- * from database.  Dispose of this with dgvPlusFree(). */
-{
-struct dgvPlus *ret;
-
-AllocVar(ret);
-ret->chrom = cloneString(row[0]);
-ret->chromStart = sqlUnsigned(row[1]);
-ret->chromEnd = sqlUnsigned(row[2]);
-ret->name = cloneString(row[3]);
-ret->score = sqlUnsigned(row[4]);
-safecpy(ret->strand, sizeof(ret->strand), row[5]);
-ret->thickStart = sqlUnsigned(row[6]);
-ret->thickEnd = sqlUnsigned(row[7]);
-ret->itemRgb = sqlUnsigned(row[8]);
-ret->varType = cloneString(row[9]);
-ret->reference = cloneString(row[10]);
-ret->pubMedId = sqlUnsigned(row[11]);
-ret->method = cloneString(row[12]);
-ret->platform = cloneString(row[13]);
-ret->mergedVariants = cloneString(row[14]);
-ret->supportingVariants = cloneString(row[15]);
-ret->sampleSize = sqlUnsigned(row[16]);
-ret->observedGains = sqlUnsigned(row[17]);
-ret->observedLosses = sqlUnsigned(row[18]);
-ret->cohortDescription = cloneString(row[19]);
-ret->genes = cloneString(row[20]);
-ret->samples = cloneString(row[21]);
-return ret;
-}
-
-struct dgvPlus *dgvPlusLoadAll(char *fileName) 
-/* Load all dgvPlus from a whitespace-separated file.
- * Dispose of this with dgvPlusFreeList(). */
-{
-struct dgvPlus *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[22];
-
-while (lineFileRow(lf, row))
-    {
-    el = dgvPlusLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct dgvPlus *dgvPlusLoadAllByChar(char *fileName, char chopper) 
-/* Load all dgvPlus from a chopper separated file.
- * Dispose of this with dgvPlusFreeList(). */
-{
-struct dgvPlus *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[22];
-
-while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
-    {
-    el = dgvPlusLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct dgvPlus *dgvPlusCommaIn(char **pS, struct dgvPlus *ret)
-/* Create a dgvPlus out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new dgvPlus */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->chrom = sqlStringComma(&s);
-ret->chromStart = sqlUnsignedComma(&s);
-ret->chromEnd = sqlUnsignedComma(&s);
-ret->name = sqlStringComma(&s);
-ret->score = sqlUnsignedComma(&s);
-sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
-ret->thickStart = sqlUnsignedComma(&s);
-ret->thickEnd = sqlUnsignedComma(&s);
-ret->itemRgb = sqlUnsignedComma(&s);
-ret->varType = sqlStringComma(&s);
-ret->reference = sqlStringComma(&s);
-ret->pubMedId = sqlUnsignedComma(&s);
-ret->method = sqlStringComma(&s);
-ret->platform = sqlStringComma(&s);
-ret->mergedVariants = sqlStringComma(&s);
-ret->supportingVariants = sqlStringComma(&s);
-ret->sampleSize = sqlUnsignedComma(&s);
-ret->observedGains = sqlUnsignedComma(&s);
-ret->observedLosses = sqlUnsignedComma(&s);
-ret->cohortDescription = sqlStringComma(&s);
-ret->genes = sqlStringComma(&s);
-ret->samples = sqlStringComma(&s);
-*pS = s;
-return ret;
-}
-
-void dgvPlusFree(struct dgvPlus **pEl)
-/* Free a single dynamically allocated dgvPlus such as created
- * with dgvPlusLoad(). */
-{
-struct dgvPlus *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->chrom);
-freeMem(el->name);
-freeMem(el->varType);
-freeMem(el->reference);
-freeMem(el->method);
-freeMem(el->platform);
-freeMem(el->mergedVariants);
-freeMem(el->supportingVariants);
-freeMem(el->cohortDescription);
-freeMem(el->genes);
-freeMem(el->samples);
-freez(pEl);
-}
-
-void dgvPlusFreeList(struct dgvPlus **pList)
-/* Free a list of dynamically allocated dgvPlus's */
-{
-struct dgvPlus *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    dgvPlusFree(&el);
-    }
-*pList = NULL;
-}
-
-void dgvPlusOutput(struct dgvPlus *el, FILE *f, char sep, char lastSep) 
-/* Print out dgvPlus.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->chrom);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->chromStart);
-fputc(sep,f);
-fprintf(f, "%u", el->chromEnd);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->name);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->score);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->strand);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->thickStart);
-fputc(sep,f);
-fprintf(f, "%u", el->thickEnd);
-fputc(sep,f);
-fprintf(f, "%u", el->itemRgb);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->varType);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->reference);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->pubMedId);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->method);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->platform);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->mergedVariants);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->supportingVariants);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->sampleSize);
-fputc(sep,f);
-fprintf(f, "%u", el->observedGains);
-fputc(sep,f);
-fprintf(f, "%u", el->observedLosses);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->cohortDescription);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->genes);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->samples);
-if (sep == ',') fputc('"',f);
-fputc(lastSep,f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-