533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/lib/dless.c src/hg/lib/dless.c deleted file mode 100644 index a272cb3..0000000 --- src/hg/lib/dless.c +++ /dev/null @@ -1,243 +0,0 @@ -/* dless.c was originally generated by the autoSql program, which also - * generated dless.h and dless.sql. This module links the database and - * the RAM representation of objects. */ - -/* Copyright (C) 2014 The Regents of the University of California - * See README in this or parent directory for licensing information. */ - -#include "common.h" -#include "linefile.h" -#include "dystring.h" -#include "jksql.h" -#include "dless.h" - - -void dlessStaticLoad(char **row, struct dless *ret) -/* Load a row from dless table into ret. The contents of ret will - * be replaced at the next call to this function. */ -{ - -ret->chrom = row[0]; -ret->chromStart = sqlUnsigned(row[1]); -ret->chromEnd = sqlUnsigned(row[2]); -ret->name = row[3]; -ret->score = atof(row[4]); -strcpy(ret->type, row[5]); -ret->branch = row[6]; -ret->pConsSub = atof(row[7]); -ret->pConsSup = atof(row[8]); -ret->pConsSubCond = atof(row[9]); -ret->pConsSupCond = atof(row[10]); -strcpy(ret->condApprox, row[11]); -ret->priorMeanSub = atof(row[12]); -ret->priorVarSub = atof(row[13]); -ret->priorMinSub = sqlUnsigned(row[14]); -ret->priorMaxSub = sqlUnsigned(row[15]); -ret->postMeanSub = atof(row[16]); -ret->postVarSub = atof(row[17]); -ret->priorMeanSup = atof(row[18]); -ret->priorVarSup = atof(row[19]); -ret->priorMinSup = sqlUnsigned(row[20]); -ret->priorMaxSup = sqlUnsigned(row[21]); -ret->postMeanSup = atof(row[22]); -ret->postVarSup = atof(row[23]); -} - -struct dless *dlessLoad(char **row) -/* Load a dless from row fetched with select * from dless - * from database. Dispose of this with dlessFree(). */ -{ -struct dless *ret; - -AllocVar(ret); -ret->chrom = cloneString(row[0]); -ret->chromStart = sqlUnsigned(row[1]); -ret->chromEnd = sqlUnsigned(row[2]); -ret->name = cloneString(row[3]); -ret->score = atof(row[4]); -strcpy(ret->type, row[5]); -ret->branch = cloneString(row[6]); -ret->pConsSub = atof(row[7]); -ret->pConsSup = atof(row[8]); -ret->pConsSubCond = atof(row[9]); -ret->pConsSupCond = atof(row[10]); -strcpy(ret->condApprox, row[11]); -ret->priorMeanSub = atof(row[12]); -ret->priorVarSub = atof(row[13]); -ret->priorMinSub = sqlUnsigned(row[14]); -ret->priorMaxSub = sqlUnsigned(row[15]); -ret->postMeanSub = atof(row[16]); -ret->postVarSub = atof(row[17]); -ret->priorMeanSup = atof(row[18]); -ret->priorVarSup = atof(row[19]); -ret->priorMinSup = sqlUnsigned(row[20]); -ret->priorMaxSup = sqlUnsigned(row[21]); -ret->postMeanSup = atof(row[22]); -ret->postVarSup = atof(row[23]); -return ret; -} - -struct dless *dlessLoadAll(char *fileName) -/* Load all dless from a whitespace-separated file. - * Dispose of this with dlessFreeList(). */ -{ -struct dless *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[24]; - -while (lineFileRow(lf, row)) - { - el = dlessLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct dless *dlessLoadAllByChar(char *fileName, char chopper) -/* Load all dless from a chopper separated file. - * Dispose of this with dlessFreeList(). */ -{ -struct dless *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[24]; - -while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) - { - el = dlessLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct dless *dlessCommaIn(char **pS, struct dless *ret) -/* Create a dless out of a comma separated string. - * This will fill in ret if non-null, otherwise will - * return a new dless */ -{ -char *s = *pS; - -if (ret == NULL) - AllocVar(ret); -ret->chrom = sqlStringComma(&s); -ret->chromStart = sqlUnsignedComma(&s); -ret->chromEnd = sqlUnsignedComma(&s); -ret->name = sqlStringComma(&s); -ret->score = sqlFloatComma(&s); -sqlFixedStringComma(&s, ret->type, sizeof(ret->type)); -ret->branch = sqlStringComma(&s); -ret->pConsSub = sqlFloatComma(&s); -ret->pConsSup = sqlFloatComma(&s); -ret->pConsSubCond = sqlFloatComma(&s); -ret->pConsSupCond = sqlFloatComma(&s); -sqlFixedStringComma(&s, ret->condApprox, sizeof(ret->condApprox)); -ret->priorMeanSub = sqlFloatComma(&s); -ret->priorVarSub = sqlFloatComma(&s); -ret->priorMinSub = sqlUnsignedComma(&s); -ret->priorMaxSub = sqlUnsignedComma(&s); -ret->postMeanSub = sqlFloatComma(&s); -ret->postVarSub = sqlFloatComma(&s); -ret->priorMeanSup = sqlFloatComma(&s); -ret->priorVarSup = sqlFloatComma(&s); -ret->priorMinSup = sqlUnsignedComma(&s); -ret->priorMaxSup = sqlUnsignedComma(&s); -ret->postMeanSup = sqlFloatComma(&s); -ret->postVarSup = sqlFloatComma(&s); -*pS = s; -return ret; -} - -void dlessFree(struct dless **pEl) -/* Free a single dynamically allocated dless such as created - * with dlessLoad(). */ -{ -struct dless *el; - -if ((el = *pEl) == NULL) return; -freeMem(el->chrom); -freeMem(el->name); -freeMem(el->branch); -freez(pEl); -} - -void dlessFreeList(struct dless **pList) -/* Free a list of dynamically allocated dless's */ -{ -struct dless *el, *next; - -for (el = *pList; el != NULL; el = next) - { - next = el->next; - dlessFree(&el); - } -*pList = NULL; -} - -void dlessOutput(struct dless *el, FILE *f, char sep, char lastSep) -/* Print out dless. Separate fields with sep. Follow last field with lastSep. */ -{ -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->chrom); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->chromStart); -fputc(sep,f); -fprintf(f, "%u", el->chromEnd); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->name); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%g", el->score); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->type); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->branch); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%g", el->pConsSub); -fputc(sep,f); -fprintf(f, "%g", el->pConsSup); -fputc(sep,f); -fprintf(f, "%g", el->pConsSubCond); -fputc(sep,f); -fprintf(f, "%g", el->pConsSupCond); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->condApprox); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%g", el->priorMeanSub); -fputc(sep,f); -fprintf(f, "%g", el->priorVarSub); -fputc(sep,f); -fprintf(f, "%u", el->priorMinSub); -fputc(sep,f); -fprintf(f, "%u", el->priorMaxSub); -fputc(sep,f); -fprintf(f, "%g", el->postMeanSub); -fputc(sep,f); -fprintf(f, "%g", el->postVarSub); -fputc(sep,f); -fprintf(f, "%g", el->priorMeanSup); -fputc(sep,f); -fprintf(f, "%g", el->priorVarSup); -fputc(sep,f); -fprintf(f, "%u", el->priorMinSup); -fputc(sep,f); -fprintf(f, "%u", el->priorMaxSup); -fputc(sep,f); -fprintf(f, "%g", el->postMeanSup); -fputc(sep,f); -fprintf(f, "%g", el->postVarSup); -fputc(lastSep,f); -} - -/* -------------------------------- End autoSql Generated Code -------------------------------- */ -