533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/dnaProbe.c src/hg/lib/dnaProbe.c
deleted file mode 100644
index 8629643..0000000
--- src/hg/lib/dnaProbe.c
+++ /dev/null
@@ -1,209 +0,0 @@
-/* dnaProbe.c was originally generated by the autoSql program, which also 
- * generated dnaProbe.h and dnaProbe.sql.  This module links the database and
- * the RAM representation of objects. */
-
-/* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "dnaProbe.h"
-
-
-void dnaProbeStaticLoad(char **row, struct dnaProbe *ret)
-/* Load a row from dnaProbe table into ret.  The contents of ret will
- * be replaced at the next call to this function. */
-{
-
-ret->name = row[0];
-ret->dna = row[1];
-ret->size = sqlSigned(row[2]);
-ret->chrom = row[3];
-ret->start = sqlSigned(row[4]);
-ret->end = sqlSigned(row[5]);
-strcpy(ret->strand, row[6]);
-ret->tpDist = sqlSigned(row[7]);
-ret->tm = atof(row[8]);
-ret->pGC = atof(row[9]);
-ret->affyHeur = sqlSigned(row[10]);
-ret->secStruct = atof(row[11]);
-ret->blatScore = sqlSigned(row[12]);
-ret->comparison = atof(row[13]);
-}
-
-struct dnaProbe *dnaProbeLoad(char **row)
-/* Load a dnaProbe from row fetched with select * from dnaProbe
- * from database.  Dispose of this with dnaProbeFree(). */
-{
-struct dnaProbe *ret;
-
-AllocVar(ret);
-ret->name = cloneString(row[0]);
-ret->dna = cloneString(row[1]);
-ret->size = sqlSigned(row[2]);
-ret->chrom = cloneString(row[3]);
-ret->start = sqlSigned(row[4]);
-ret->end = sqlSigned(row[5]);
-strcpy(ret->strand, row[6]);
-ret->tpDist = sqlSigned(row[7]);
-ret->tm = atof(row[8]);
-ret->pGC = atof(row[9]);
-ret->affyHeur = sqlSigned(row[10]);
-ret->secStruct = atof(row[11]);
-ret->blatScore = sqlSigned(row[12]);
-ret->comparison = atof(row[13]);
-return ret;
-}
-
-struct dnaProbe *dnaProbeLoadAll(char *fileName) 
-/* Load all dnaProbe from a tab-separated file.
- * Dispose of this with dnaProbeFreeList(). */
-{
-struct dnaProbe *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[14];
-
-while (lineFileRow(lf, row))
-    {
-    el = dnaProbeLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct dnaProbe *dnaProbeLoadByQuery(struct sqlConnection *conn, char *query)
-/* Load all dnaProbe from table that satisfy the query given.  
- * Where query is of the form 'select * from example where something=something'
- * or 'select example.* from example, anotherTable where example.something = 
- * anotherTable.something'.
- * Dispose of this with dnaProbeFreeList(). */
-{
-struct dnaProbe *list = NULL, *el;
-struct sqlResult *sr;
-char **row;
-
-sr = sqlGetResult(conn, query);
-while ((row = sqlNextRow(sr)) != NULL)
-    {
-    el = dnaProbeLoad(row);
-    slAddHead(&list, el);
-    }
-slReverse(&list);
-sqlFreeResult(&sr);
-return list;
-}
-
-void dnaProbeSaveToDb(struct sqlConnection *conn, struct dnaProbe *el, char *tableName, int updateSize)
-/* Save dnaProbe as a row to the table specified by tableName. 
- * As blob fields may be arbitrary size updateSize specifies the approx size
- * of a string that would contain the entire query. Arrays of native types are
- * converted to comma separated strings and loaded as such, User defined types are
- * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
-{
-struct dyString *update = newDyString(updateSize);
-sqlDyStringPrintf(update, "insert into %s values ( '%s','%s',%d,'%s',%d,%d,'%s',%d,%f,%f,%d,%f,%d,%f)", 
-	tableName,  el->name,  el->dna,  el->size,  el->chrom,  el->start,  el->end,  el->strand,  el->tpDist,  el->tm,  el->pGC,  el->affyHeur,  el->secStruct,  el->blatScore,  el->comparison);
-sqlUpdate(conn, update->string);
-freeDyString(&update);
-}
-
-struct dnaProbe *dnaProbeCommaIn(char **pS, struct dnaProbe *ret)
-/* Create a dnaProbe out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new dnaProbe */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->name = sqlStringComma(&s);
-ret->dna = sqlStringComma(&s);
-ret->size = sqlSignedComma(&s);
-ret->chrom = sqlStringComma(&s);
-ret->start = sqlSignedComma(&s);
-ret->end = sqlSignedComma(&s);
-sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
-ret->tpDist = sqlSignedComma(&s);
-ret->tm = sqlFloatComma(&s);
-ret->pGC = sqlFloatComma(&s);
-ret->affyHeur = sqlSignedComma(&s);
-ret->secStruct = sqlFloatComma(&s);
-ret->blatScore = sqlSignedComma(&s);
-ret->comparison = sqlFloatComma(&s);
-*pS = s;
-return ret;
-}
-
-void dnaProbeFree(struct dnaProbe **pEl)
-/* Free a single dynamically allocated dnaProbe such as created
- * with dnaProbeLoad(). */
-{
-struct dnaProbe *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->name);
-freeMem(el->dna);
-freeMem(el->chrom);
-freez(pEl);
-}
-
-void dnaProbeFreeList(struct dnaProbe **pList)
-/* Free a list of dynamically allocated dnaProbe's */
-{
-struct dnaProbe *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    dnaProbeFree(&el);
-    }
-*pList = NULL;
-}
-
-void dnaProbeOutput(struct dnaProbe *el, FILE *f, char sep, char lastSep) 
-/* Print out dnaProbe.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->name);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->dna);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%d", el->size);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->chrom);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%d", el->start);
-fputc(sep,f);
-fprintf(f, "%d", el->end);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->strand);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%d", el->tpDist);
-fputc(sep,f);
-fprintf(f, "%f", el->tm);
-fputc(sep,f);
-fprintf(f, "%f", el->pGC);
-fputc(sep,f);
-fprintf(f, "%d", el->affyHeur);
-fputc(sep,f);
-fprintf(f, "%f", el->secStruct);
-fputc(sep,f);
-fprintf(f, "%d", el->blatScore);
-fputc(sep,f);
-fprintf(f, "%f", el->comparison);
-fputc(lastSep,f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-