533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/ensFace.c src/hg/lib/ensFace.c
deleted file mode 100644
index 3bf92fc..0000000
--- src/hg/lib/ensFace.c
+++ /dev/null
@@ -1,152 +0,0 @@
-/* ensFace - stuff to manage interface to Ensembl web site. */
-
-/* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
-
-#include "common.h"
-#include "dystring.h"
-#include "ensFace.h"
-#include "hCommon.h"
-#include "hdb.h"
-
-
-struct stringPair
-/* A pair of strings. */
-   {
-   char *a;	/* One string. */
-   char *b;	/* The other string */
-   };
-
-
-char *ensOrgNameFromScientificName(char *scientificName)
-/* Convert from ucsc to Ensembl organism name.
- * This is scientific name, with underscore replacing spaces
- * Caller must free returned string */
-{
-    char *p;
-    char *res;
-    if (scientificName == NULL) 
-        return NULL;
-    if (sameWord(scientificName, "Takifugu rubripes"))
-        {
-        /* special case for fugu, whose scientific name
-         * has been changed to Takifugu, but not at ensembl */
-        return "Fugu_rubripes";
-        }
-    if (sameWord(scientificName, "Pongo pygmaeus abelii"))
-        {
-        /* special case for Orangutan, different form of the same
-         * scientific name */
-        return "Pongo_pygmaeus";
-        }
-    if (sameWord(scientificName, "Canis lupus familiaris"))
-        {
-        /* special case for Dog, different form of the same
-         * scientific name */
-        return "Canis_familiaris";
-        }
-    if (sameWord(scientificName, "Gorilla gorilla gorilla"))
-        {
-        /* special case for Dog, different form of the same
-         * scientific name */
-        return "Gorilla_gorilla";
-        }
-    if (sameWord(scientificName, "Spermophilus tridecemlineatus"))
-        {
-        /* special case for squirrel, whose scientific name has been
-         * changed from Spermophilusv to Ictidomys at ensembl */
-        return "Ictidomys_tridecemlineatus";
-        }
-
-    /* replace spaces with underscores, assume max two spaces
-     * (species and sub-species).  */
-    res = cloneString(scientificName);
-    if ((p = index(res, ' ')) != NULL)
-        *p = '_';
-    if ((p = rindex(res, ' ')) != NULL)
-        *p = '_';
-    return res;
-}
-
-static char *ucscToEnsembl(char *database, char *chrom)
-/* if table UCSC_TO_ENSEMBL exists in the given database, return the
-   Ensembl name for this chrom */
-{
-static char ensemblName[256];
-struct sqlConnection *conn = hAllocConn(database);
-ensemblName[0] = 0;
-if (sqlTableExists(conn, UCSC_TO_ENSEMBL))
-    {
-    char query[256];
-    sqlSafef(query, ArraySize(query), "select ensembl from %s where ucsc='%s'",
-	UCSC_TO_ENSEMBL, chrom);
-    (void) sqlQuickQuery(conn,query,ensemblName,ArraySize(ensemblName));
-    }
-return ensemblName;
-}
-
-static int liftToEnsembl(char *database, char *chrom)
-/* if table ENSEMBL_LIFT exists in the given database, return the
-   offset for this chrom, else return zero */
-{
-int offset = 0;
-struct sqlConnection *conn = hAllocConn(database);
-
-if (sqlTableExists(conn, ENSEMBL_LIFT))
-    {
-    char query[256];
-    sqlSafef(query, ArraySize(query), "select offset from %s where chrom='%s'",
-	ENSEMBL_LIFT, chrom);
-    offset = sqlQuickNum(conn,query); // returns 0 for failed query
-    }
-return offset;
-}
-
-struct dyString *ensContigViewUrl(
-char *database, char *ensOrg, char *chrom, int chromSize,
-                            int winStart, int winEnd, char *archive)
-/* Return a URL that will take you to ensembl's contig view. */
-/* Not using chromSize.  archive is possibly a date reference */
-{
-struct dyString *dy = dyStringNew(0);
-char *chrName;
-char *ensemblName = ucscToEnsembl(database, chrom);
-int ensemblLift = 0;
-int start = winStart;
-int end = winEnd;
-
-if (isNotEmpty(ensemblName))
-    {
-    chrName = ensemblName;
-    ensemblLift = liftToEnsembl(database, ensemblName);
-    start += ensemblLift;
-    end += ensemblLift;
-    }
-else if (startsWith("scaffold", chrom))
-    chrName = chrom;
-else
-    chrName = skipChr(chrom);
-
-if (archive)
-    if (sameWord(archive,"ncbi36"))
-	{
-    dyStringPrintf(dy, 
-	   "http://%s.ensembl.org/%s/contigview?chr=%s&start=%d&end=%d",
-		    archive, ensOrg, chrName, start, end);
-	}
-    else
-	{
-    dyStringPrintf(dy, 
-	   "http://%s.archive.ensembl.org/%s/contigview?chr=%s&start=%d&end=%d",
-		    archive, ensOrg, chrName, start, end);
-	}
-else
-    if (sameWord(database, "hg19"))
-        // grch37 now has a special status within Ensembl, with a separate server that gets special updates
-        dyStringPrintf(dy, 
-               "http://grch37.ensembl.org/Homo_sapiens/contigview?chr=%s&start=%d&end=%d", chrName, start, end);
-    else
-        dyStringPrintf(dy, 
-               "http://www.ensembl.org/%s/contigview?chr=%s&start=%d&end=%d", ensOrg, chrName, start, end);
-return dy;
-}