533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/hapmapAllelesSummary.c src/hg/lib/hapmapAllelesSummary.c
deleted file mode 100644
index d8ca98b..0000000
--- src/hg/lib/hapmapAllelesSummary.c
+++ /dev/null
@@ -1,282 +0,0 @@
-/* hapmapAllelesSummary.c was originally generated by the autoSql program, which also 
- * generated hapmapAllelesSummary.h and hapmapAllelesSummary.sql.  This module links the database and
- * the RAM representation of objects. */
-
-/* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "hapmapAllelesSummary.h"
-
-
-void hapmapAllelesSummaryStaticLoad(char **row, struct hapmapAllelesSummary *ret)
-/* Load a row from hapmapAllelesSummary table into ret.  The contents of ret will
- * be replaced at the next call to this function. */
-{
-
-ret->chrom = row[0];
-ret->chromStart = sqlUnsigned(row[1]);
-ret->chromEnd = sqlUnsigned(row[2]);
-ret->name = row[3];
-ret->score = sqlUnsigned(row[4]);
-safecpy(ret->strand, sizeof(ret->strand), row[5]);
-ret->observed = row[6];
-safecpy(ret->allele1, sizeof(ret->allele1), row[7]);
-ret->allele2 = row[8];
-ret->popCount = sqlUnsigned(row[9]);
-ret->isMixed = row[10];
-ret->majorAlleleCEU = row[11];
-ret->majorAlleleCountCEU = sqlUnsigned(row[12]);
-ret->totalAlleleCountCEU = sqlUnsigned(row[13]);
-ret->majorAlleleCHB = row[14];
-ret->majorAlleleCountCHB = sqlUnsigned(row[15]);
-ret->totalAlleleCountCHB = sqlUnsigned(row[16]);
-ret->majorAlleleJPT = row[17];
-ret->majorAlleleCountJPT = sqlUnsigned(row[18]);
-ret->totalAlleleCountJPT = sqlUnsigned(row[19]);
-ret->majorAlleleYRI = row[20];
-ret->majorAlleleCountYRI = sqlUnsigned(row[21]);
-ret->totalAlleleCountYRI = sqlUnsigned(row[22]);
-ret->chimpAllele = row[23];
-ret->chimpAlleleQuality = sqlUnsigned(row[24]);
-ret->macaqueAllele = row[25];
-ret->macaqueAlleleQuality = sqlUnsigned(row[26]);
-}
-
-struct hapmapAllelesSummary *hapmapAllelesSummaryLoad(char **row)
-/* Load a hapmapAllelesSummary from row fetched with select * from hapmapAllelesSummary
- * from database.  Dispose of this with hapmapAllelesSummaryFree(). */
-{
-struct hapmapAllelesSummary *ret;
-
-AllocVar(ret);
-ret->chrom = cloneString(row[0]);
-ret->chromStart = sqlUnsigned(row[1]);
-ret->chromEnd = sqlUnsigned(row[2]);
-ret->name = cloneString(row[3]);
-ret->score = sqlUnsigned(row[4]);
-safecpy(ret->strand, sizeof(ret->strand), row[5]);
-ret->observed = cloneString(row[6]);
-safecpy(ret->allele1, sizeof(ret->allele1), row[7]);
-ret->allele2 = cloneString(row[8]);
-ret->popCount = sqlUnsigned(row[9]);
-ret->isMixed = cloneString(row[10]);
-ret->majorAlleleCEU = cloneString(row[11]);
-ret->majorAlleleCountCEU = sqlUnsigned(row[12]);
-ret->totalAlleleCountCEU = sqlUnsigned(row[13]);
-ret->majorAlleleCHB = cloneString(row[14]);
-ret->majorAlleleCountCHB = sqlUnsigned(row[15]);
-ret->totalAlleleCountCHB = sqlUnsigned(row[16]);
-ret->majorAlleleJPT = cloneString(row[17]);
-ret->majorAlleleCountJPT = sqlUnsigned(row[18]);
-ret->totalAlleleCountJPT = sqlUnsigned(row[19]);
-ret->majorAlleleYRI = cloneString(row[20]);
-ret->majorAlleleCountYRI = sqlUnsigned(row[21]);
-ret->totalAlleleCountYRI = sqlUnsigned(row[22]);
-ret->chimpAllele = cloneString(row[23]);
-ret->chimpAlleleQuality = sqlUnsigned(row[24]);
-ret->macaqueAllele = cloneString(row[25]);
-ret->macaqueAlleleQuality = sqlUnsigned(row[26]);
-return ret;
-}
-
-struct hapmapAllelesSummary *hapmapAllelesSummaryLoadAll(char *fileName) 
-/* Load all hapmapAllelesSummary from a whitespace-separated file.
- * Dispose of this with hapmapAllelesSummaryFreeList(). */
-{
-struct hapmapAllelesSummary *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[27];
-
-while (lineFileRow(lf, row))
-    {
-    el = hapmapAllelesSummaryLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct hapmapAllelesSummary *hapmapAllelesSummaryLoadAllByChar(char *fileName, char chopper) 
-/* Load all hapmapAllelesSummary from a chopper separated file.
- * Dispose of this with hapmapAllelesSummaryFreeList(). */
-{
-struct hapmapAllelesSummary *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[27];
-
-while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
-    {
-    el = hapmapAllelesSummaryLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct hapmapAllelesSummary *hapmapAllelesSummaryCommaIn(char **pS, struct hapmapAllelesSummary *ret)
-/* Create a hapmapAllelesSummary out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new hapmapAllelesSummary */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->chrom = sqlStringComma(&s);
-ret->chromStart = sqlUnsignedComma(&s);
-ret->chromEnd = sqlUnsignedComma(&s);
-ret->name = sqlStringComma(&s);
-ret->score = sqlUnsignedComma(&s);
-sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
-ret->observed = sqlStringComma(&s);
-sqlFixedStringComma(&s, ret->allele1, sizeof(ret->allele1));
-ret->allele2 = sqlStringComma(&s);
-ret->popCount = sqlUnsignedComma(&s);
-ret->isMixed = sqlStringComma(&s);
-ret->majorAlleleCEU = sqlStringComma(&s);
-ret->majorAlleleCountCEU = sqlUnsignedComma(&s);
-ret->totalAlleleCountCEU = sqlUnsignedComma(&s);
-ret->majorAlleleCHB = sqlStringComma(&s);
-ret->majorAlleleCountCHB = sqlUnsignedComma(&s);
-ret->totalAlleleCountCHB = sqlUnsignedComma(&s);
-ret->majorAlleleJPT = sqlStringComma(&s);
-ret->majorAlleleCountJPT = sqlUnsignedComma(&s);
-ret->totalAlleleCountJPT = sqlUnsignedComma(&s);
-ret->majorAlleleYRI = sqlStringComma(&s);
-ret->majorAlleleCountYRI = sqlUnsignedComma(&s);
-ret->totalAlleleCountYRI = sqlUnsignedComma(&s);
-ret->chimpAllele = sqlStringComma(&s);
-ret->chimpAlleleQuality = sqlUnsignedComma(&s);
-ret->macaqueAllele = sqlStringComma(&s);
-ret->macaqueAlleleQuality = sqlUnsignedComma(&s);
-*pS = s;
-return ret;
-}
-
-void hapmapAllelesSummaryFree(struct hapmapAllelesSummary **pEl)
-/* Free a single dynamically allocated hapmapAllelesSummary such as created
- * with hapmapAllelesSummaryLoad(). */
-{
-struct hapmapAllelesSummary *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->chrom);
-freeMem(el->name);
-freeMem(el->observed);
-freeMem(el->allele2);
-freeMem(el->isMixed);
-freeMem(el->majorAlleleCEU);
-freeMem(el->majorAlleleCHB);
-freeMem(el->majorAlleleJPT);
-freeMem(el->majorAlleleYRI);
-freeMem(el->chimpAllele);
-freeMem(el->macaqueAllele);
-freez(pEl);
-}
-
-void hapmapAllelesSummaryFreeList(struct hapmapAllelesSummary **pList)
-/* Free a list of dynamically allocated hapmapAllelesSummary's */
-{
-struct hapmapAllelesSummary *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    hapmapAllelesSummaryFree(&el);
-    }
-*pList = NULL;
-}
-
-void hapmapAllelesSummaryOutput(struct hapmapAllelesSummary *el, FILE *f, char sep, char lastSep) 
-/* Print out hapmapAllelesSummary.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->chrom);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->chromStart);
-fputc(sep,f);
-fprintf(f, "%u", el->chromEnd);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->name);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->score);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->strand);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->observed);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->allele1);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->allele2);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->popCount);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->isMixed);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->majorAlleleCEU);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->majorAlleleCountCEU);
-fputc(sep,f);
-fprintf(f, "%u", el->totalAlleleCountCEU);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->majorAlleleCHB);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->majorAlleleCountCHB);
-fputc(sep,f);
-fprintf(f, "%u", el->totalAlleleCountCHB);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->majorAlleleJPT);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->majorAlleleCountJPT);
-fputc(sep,f);
-fprintf(f, "%u", el->totalAlleleCountJPT);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->majorAlleleYRI);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->majorAlleleCountYRI);
-fputc(sep,f);
-fprintf(f, "%u", el->totalAlleleCountYRI);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->chimpAllele);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->chimpAlleleQuality);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->macaqueAllele);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->macaqueAlleleQuality);
-fputc(lastSep,f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-