533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/hgdpGeo.c src/hg/lib/hgdpGeo.c
deleted file mode 100644
index 08b705f..0000000
--- src/hg/lib/hgdpGeo.c
+++ /dev/null
@@ -1,173 +0,0 @@
-/* hgdpGeo.c was originally generated by the autoSql program, which also 
- * generated hgdpGeo.h and hgdpGeo.sql.  This module links the database and
- * the RAM representation of objects. */
-
-/* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "hgdpGeo.h"
-
-
-void hgdpGeoStaticLoad(char **row, struct hgdpGeo *ret)
-/* Load a row from hgdpGeo table into ret.  The contents of ret will
- * be replaced at the next call to this function. */
-{
-
-ret->chrom = row[0];
-ret->chromStart = sqlUnsigned(row[1]);
-ret->chromEnd = sqlUnsigned(row[2]);
-ret->name = row[3];
-ret->ancestralAllele = row[4][0];
-ret->derivedAllele = row[5][0];
-sqlFloatArray(row[6], ret->popFreqs, 53);
-}
-
-struct hgdpGeo *hgdpGeoLoad(char **row)
-/* Load a hgdpGeo from row fetched with select * from hgdpGeo
- * from database.  Dispose of this with hgdpGeoFree(). */
-{
-struct hgdpGeo *ret;
-
-AllocVar(ret);
-ret->chrom = cloneString(row[0]);
-ret->chromStart = sqlUnsigned(row[1]);
-ret->chromEnd = sqlUnsigned(row[2]);
-ret->name = cloneString(row[3]);
-ret->ancestralAllele = row[4][0];
-ret->derivedAllele = row[5][0];
-sqlFloatArray(row[6], ret->popFreqs, 53);
-return ret;
-}
-
-struct hgdpGeo *hgdpGeoLoadAll(char *fileName) 
-/* Load all hgdpGeo from a whitespace-separated file.
- * Dispose of this with hgdpGeoFreeList(). */
-{
-struct hgdpGeo *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[7];
-
-while (lineFileRow(lf, row))
-    {
-    el = hgdpGeoLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct hgdpGeo *hgdpGeoLoadAllByChar(char *fileName, char chopper) 
-/* Load all hgdpGeo from a chopper separated file.
- * Dispose of this with hgdpGeoFreeList(). */
-{
-struct hgdpGeo *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[7];
-
-while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
-    {
-    el = hgdpGeoLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct hgdpGeo *hgdpGeoCommaIn(char **pS, struct hgdpGeo *ret)
-/* Create a hgdpGeo out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new hgdpGeo */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->chrom = sqlStringComma(&s);
-ret->chromStart = sqlUnsignedComma(&s);
-ret->chromEnd = sqlUnsignedComma(&s);
-ret->name = sqlStringComma(&s);
-sqlFixedStringComma(&s, &(ret->ancestralAllele), sizeof(ret->ancestralAllele));
-sqlFixedStringComma(&s, &(ret->derivedAllele), sizeof(ret->derivedAllele));
-{
-int i;
-s = sqlEatChar(s, '{');
-for (i=0; i<53; ++i)
-    {
-    ret->popFreqs[i] = sqlFloatComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-*pS = s;
-return ret;
-}
-
-void hgdpGeoFree(struct hgdpGeo **pEl)
-/* Free a single dynamically allocated hgdpGeo such as created
- * with hgdpGeoLoad(). */
-{
-struct hgdpGeo *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->chrom);
-freeMem(el->name);
-freez(pEl);
-}
-
-void hgdpGeoFreeList(struct hgdpGeo **pList)
-/* Free a list of dynamically allocated hgdpGeo's */
-{
-struct hgdpGeo *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    hgdpGeoFree(&el);
-    }
-*pList = NULL;
-}
-
-void hgdpGeoOutput(struct hgdpGeo *el, FILE *f, char sep, char lastSep) 
-/* Print out hgdpGeo.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->chrom);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->chromStart);
-fputc(sep,f);
-fprintf(f, "%u", el->chromEnd);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->name);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%c", el->ancestralAllele);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%c", el->derivedAllele);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<53; ++i)
-    {
-    fprintf(f, "%g", el->popFreqs[i]);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(lastSep,f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-