533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/jaxOrtholog.c src/hg/lib/jaxOrtholog.c
deleted file mode 100644
index 2c5dc89..0000000
--- src/hg/lib/jaxOrtholog.c
+++ /dev/null
@@ -1,171 +0,0 @@
-/* jaxOrtholog.c was originally generated by the autoSql program, which also 
- * generated jaxOrtholog.h and jaxOrtholog.sql.  This module links the database and
- * the RAM representation of objects. */
-
-/* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "jaxOrtholog.h"
-
-
-void jaxOrthologStaticLoad(char **row, struct jaxOrtholog *ret)
-/* Load a row from jaxOrtholog table into ret.  The contents of ret will
- * be replaced at the next call to this function. */
-{
-
-ret->humanSymbol = row[0];
-ret->humanBand = row[1];
-ret->mgiId = row[2];
-ret->mouseSymbol = row[3];
-ret->mouseChr = row[4];
-ret->mouseCm = row[5];
-ret->mouseBand = row[6];
-}
-
-struct jaxOrtholog *jaxOrthologLoad(char **row)
-/* Load a jaxOrtholog from row fetched with select * from jaxOrtholog
- * from database.  Dispose of this with jaxOrthologFree(). */
-{
-struct jaxOrtholog *ret;
-
-AllocVar(ret);
-ret->humanSymbol = cloneString(row[0]);
-ret->humanBand = cloneString(row[1]);
-ret->mgiId = cloneString(row[2]);
-ret->mouseSymbol = cloneString(row[3]);
-ret->mouseChr = cloneString(row[4]);
-ret->mouseCm = cloneString(row[5]);
-ret->mouseBand = cloneString(row[6]);
-return ret;
-}
-
-struct jaxOrtholog *jaxOrthologLoadAll(char *fileName) 
-/* Load all jaxOrtholog from a tab-separated file.
- * Dispose of this with jaxOrthologFreeList(). */
-{
-struct jaxOrtholog *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[7];
-
-while (lineFileRow(lf, row))
-    {
-    el = jaxOrthologLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct jaxOrtholog *jaxOrthologLoadWhere(struct sqlConnection *conn, char *table, char *where)
-/* Load all jaxOrtholog from table that satisfy where clause. The
- * where clause may be NULL in which case whole table is loaded
- * Dispose of this with jaxOrthologFreeList(). */
-{
-struct jaxOrtholog *list = NULL, *el;
-struct dyString *query = dyStringNew(256);
-struct sqlResult *sr;
-char **row;
-
-sqlDyStringPrintf(query, "select * from %s", table);
-if (where != NULL)
-    dyStringPrintf(query, " where %s", where);
-sr = sqlGetResult(conn, query->string);
-while ((row = sqlNextRow(sr)) != NULL)
-    {
-    el = jaxOrthologLoad(row);
-    slAddHead(&list, el);
-    }
-slReverse(&list);
-sqlFreeResult(&sr);
-dyStringFree(&query);
-return list;
-}
-
-struct jaxOrtholog *jaxOrthologCommaIn(char **pS, struct jaxOrtholog *ret)
-/* Create a jaxOrtholog out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new jaxOrtholog */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->humanSymbol = sqlStringComma(&s);
-ret->humanBand = sqlStringComma(&s);
-ret->mgiId = sqlStringComma(&s);
-ret->mouseSymbol = sqlStringComma(&s);
-ret->mouseChr = sqlStringComma(&s);
-ret->mouseCm = sqlStringComma(&s);
-ret->mouseBand = sqlStringComma(&s);
-*pS = s;
-return ret;
-}
-
-void jaxOrthologFree(struct jaxOrtholog **pEl)
-/* Free a single dynamically allocated jaxOrtholog such as created
- * with jaxOrthologLoad(). */
-{
-struct jaxOrtholog *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->humanSymbol);
-freeMem(el->humanBand);
-freeMem(el->mgiId);
-freeMem(el->mouseSymbol);
-freeMem(el->mouseChr);
-freeMem(el->mouseCm);
-freeMem(el->mouseBand);
-freez(pEl);
-}
-
-void jaxOrthologFreeList(struct jaxOrtholog **pList)
-/* Free a list of dynamically allocated jaxOrtholog's */
-{
-struct jaxOrtholog *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    jaxOrthologFree(&el);
-    }
-*pList = NULL;
-}
-
-void jaxOrthologOutput(struct jaxOrtholog *el, FILE *f, char sep, char lastSep) 
-/* Print out jaxOrtholog.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->humanSymbol);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->humanBand);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->mgiId);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->mouseSymbol);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->mouseChr);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->mouseCm);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->mouseBand);
-if (sep == ',') fputc('"',f);
-fputc(lastSep,f);
-}
-