533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/ld.c src/hg/lib/ld.c
deleted file mode 100644
index 72b0b1a..0000000
--- src/hg/lib/ld.c
+++ /dev/null
@@ -1,202 +0,0 @@
-/* ld.c was originally generated by the autoSql program, which also 
- * generated ld.h and ld.sql.  This module links the database and
- * the RAM representation of objects. */
-
-/* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "ld.h"
-
-
-void ldStaticLoad(char **row, struct ld *ret)
-/* Load a row from ld table into ret.  The contents of ret will
- * be replaced at the next call to this function. */
-{
-
-ret->chrom = row[0];
-ret->chromStart = sqlUnsigned(row[1]);
-ret->chromEnd = sqlUnsigned(row[2]);
-ret->name = row[3];
-ret->score = sqlUnsigned(row[4]);
-ret->dprime = row[5];
-ret->rsquared = row[6];
-ret->lod = row[7];
-}
-
-struct ld *ldLoad(char **row)
-/* Load a ld from row fetched with select * from ld
- * from database.  Dispose of this with ldFree(). */
-{
-struct ld *ret;
-
-AllocVar(ret);
-ret->chrom = cloneString(row[0]);
-ret->chromStart = sqlUnsigned(row[1]);
-ret->chromEnd = sqlUnsigned(row[2]);
-ret->name = cloneString(row[3]);
-ret->score = sqlUnsigned(row[4]);
-ret->dprime = cloneString(row[5]);
-ret->rsquared = cloneString(row[6]);
-ret->lod = cloneString(row[7]);
-return ret;
-}
-
-struct ld *ldLoadAll(char *fileName) 
-/* Load all ld from a whitespace-separated file.
- * Dispose of this with ldFreeList(). */
-{
-struct ld *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[8];
-
-while (lineFileRow(lf, row))
-    {
-    el = ldLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct ld *ldLoadAllByChar(char *fileName, char chopper) 
-/* Load all ld from a chopper separated file.
- * Dispose of this with ldFreeList(). */
-{
-struct ld *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[8];
-
-while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
-    {
-    el = ldLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct ld *ldLoadByQuery(struct sqlConnection *conn, char *query)
-/* Load all ld from table that satisfy the query given.  
- * Where query is of the form 'select * from example where something=something'
- * or 'select example.* from example, anotherTable where example.something = 
- * anotherTable.something'.
- * Dispose of this with ldFreeList(). */
-{
-struct ld *list = NULL, *el;
-struct sqlResult *sr;
-char **row;
-
-sr = sqlGetResult(conn, query);
-while ((row = sqlNextRow(sr)) != NULL)
-    {
-    el = ldLoad(row);
-    slAddHead(&list, el);
-    }
-slReverse(&list);
-sqlFreeResult(&sr);
-return list;
-}
-
-void ldSaveToDb(struct sqlConnection *conn, struct ld *el, char *tableName, int updateSize)
-/* Save ld as a row to the table specified by tableName. 
- * As blob fields may be arbitrary size updateSize specifies the approx size
- * of a string that would contain the entire query. Arrays of native types are
- * converted to comma separated strings and loaded as such, User defined types are
- * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
-{
-struct dyString *update = newDyString(updateSize);
-sqlDyStringPrintf(update, "insert into %s values ( '%s',%u,%u,'%s',%u,'%s','%s','%s')", 
-	tableName,  el->chrom,  el->chromStart,  el->chromEnd,  el->name,  el->score,  el->dprime,  el->rsquared,  el->lod);
-sqlUpdate(conn, update->string);
-freeDyString(&update);
-}
-
-
-struct ld *ldCommaIn(char **pS, struct ld *ret)
-/* Create a ld out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new ld */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->chrom = sqlStringComma(&s);
-ret->chromStart = sqlUnsignedComma(&s);
-ret->chromEnd = sqlUnsignedComma(&s);
-ret->name = sqlStringComma(&s);
-ret->score = sqlUnsignedComma(&s);
-ret->dprime = sqlStringComma(&s);
-ret->rsquared = sqlStringComma(&s);
-ret->lod = sqlStringComma(&s);
-*pS = s;
-return ret;
-}
-
-void ldFree(struct ld **pEl)
-/* Free a single dynamically allocated ld such as created
- * with ldLoad(). */
-{
-struct ld *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->chrom);
-freeMem(el->name);
-freeMem(el->dprime);
-freeMem(el->rsquared);
-freeMem(el->lod);
-freez(pEl);
-}
-
-void ldFreeList(struct ld **pList)
-/* Free a list of dynamically allocated ld's */
-{
-struct ld *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    ldFree(&el);
-    }
-*pList = NULL;
-}
-
-void ldOutput(struct ld *el, FILE *f, char sep, char lastSep) 
-/* Print out ld.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->chrom);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->chromStart);
-fputc(sep,f);
-fprintf(f, "%u", el->chromEnd);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->name);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->score);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->dprime);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->rsquared);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->lod);
-if (sep == ',') fputc('"',f);
-fputc(lastSep,f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-