533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/lib/mcnBreakpoints.c src/hg/lib/mcnBreakpoints.c deleted file mode 100644 index 79a3dbe..0000000 --- src/hg/lib/mcnBreakpoints.c +++ /dev/null @@ -1,168 +0,0 @@ -/* mcnBreakpoints.c was originally generated by the autoSql program, which also - * generated mcnBreakpoints.h and mcnBreakpoints.sql. This module links the database and - * the RAM representation of objects. */ - -/* Copyright (C) 2014 The Regents of the University of California - * See README in this or parent directory for licensing information. */ - -#include "common.h" -#include "linefile.h" -#include "jksql.h" -#include "mcnBreakpoints.h" - - -void mcnBreakpointsStaticLoad(char **row, struct mcnBreakpoints *ret) -/* Load a row from mcnBreakpoints table into ret. The contents of ret will - * be replaced at the next call to this function. */ -{ - -ret->chrom = row[0]; -ret->chromStart = sqlUnsigned(row[1]); -ret->chromEnd = sqlUnsigned(row[2]); -ret->name = row[3]; -ret->score = sqlUnsigned(row[4]); -ret->caseId = row[5]; -ret->bpId = row[6]; -ret->trId = row[7]; -ret->trTxt = row[8]; -ret->tgId = row[9]; -ret->tgTxt = row[10]; -} - -struct mcnBreakpoints *mcnBreakpointsLoad(char **row) -/* Load a mcnBreakpoints from row fetched with select * from mcnBreakpoints - * from database. Dispose of this with mcnBreakpointsFree(). */ -{ -struct mcnBreakpoints *ret; - -AllocVar(ret); -ret->chrom = cloneString(row[0]); -ret->chromStart = sqlUnsigned(row[1]); -ret->chromEnd = sqlUnsigned(row[2]); -ret->name = cloneString(row[3]); -ret->score = sqlUnsigned(row[4]); -ret->caseId = cloneString(row[5]); -ret->bpId = cloneString(row[6]); -ret->trId = cloneString(row[7]); -ret->trTxt = cloneString(row[8]); -ret->tgId = cloneString(row[9]); -ret->tgTxt = cloneString(row[10]); -return ret; -} - -struct mcnBreakpoints *mcnBreakpointsLoadAll(char *fileName) -/* Load all mcnBreakpoints from a tab-separated file. - * Dispose of this with mcnBreakpointsFreeList(). */ -{ -struct mcnBreakpoints *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[11]; - -while (lineFileRow(lf, row)) - { - el = mcnBreakpointsLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct mcnBreakpoints *mcnBreakpointsCommaIn(char **pS, struct mcnBreakpoints *ret) -/* Create a mcnBreakpoints out of a comma separated string. - * This will fill in ret if non-null, otherwise will - * return a new mcnBreakpoints */ -{ -char *s = *pS; - -if (ret == NULL) - AllocVar(ret); -ret->chrom = sqlStringComma(&s); -ret->chromStart = sqlUnsignedComma(&s); -ret->chromEnd = sqlUnsignedComma(&s); -ret->name = sqlStringComma(&s); -ret->score = sqlUnsignedComma(&s); -ret->caseId = sqlStringComma(&s); -ret->bpId = sqlStringComma(&s); -ret->trId = sqlStringComma(&s); -ret->trTxt = sqlStringComma(&s); -ret->tgId = sqlStringComma(&s); -ret->tgTxt = sqlStringComma(&s); -*pS = s; -return ret; -} - -void mcnBreakpointsFree(struct mcnBreakpoints **pEl) -/* Free a single dynamically allocated mcnBreakpoints such as created - * with mcnBreakpointsLoad(). */ -{ -struct mcnBreakpoints *el; - -if ((el = *pEl) == NULL) return; -freeMem(el->chrom); -freeMem(el->name); -freeMem(el->caseId); -freeMem(el->bpId); -freeMem(el->trId); -freeMem(el->trTxt); -freeMem(el->tgId); -freeMem(el->tgTxt); -freez(pEl); -} - -void mcnBreakpointsFreeList(struct mcnBreakpoints **pList) -/* Free a list of dynamically allocated mcnBreakpoints's */ -{ -struct mcnBreakpoints *el, *next; - -for (el = *pList; el != NULL; el = next) - { - next = el->next; - mcnBreakpointsFree(&el); - } -*pList = NULL; -} - -void mcnBreakpointsOutput(struct mcnBreakpoints *el, FILE *f, char sep, char lastSep) -/* Print out mcnBreakpoints. Separate fields with sep. Follow last field with lastSep. */ -{ -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->chrom); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->chromStart); -fputc(sep,f); -fprintf(f, "%u", el->chromEnd); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->name); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->score); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->caseId); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->bpId); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->trId); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->trTxt); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->tgId); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->tgTxt); -if (sep == ',') fputc('"',f); -fputc(lastSep,f); -} -