533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/mcnBreakpoints.c src/hg/lib/mcnBreakpoints.c
deleted file mode 100644
index 79a3dbe..0000000
--- src/hg/lib/mcnBreakpoints.c
+++ /dev/null
@@ -1,168 +0,0 @@
-/* mcnBreakpoints.c was originally generated by the autoSql program, which also 
- * generated mcnBreakpoints.h and mcnBreakpoints.sql.  This module links the database and
- * the RAM representation of objects. */
-
-/* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
-
-#include "common.h"
-#include "linefile.h"
-#include "jksql.h"
-#include "mcnBreakpoints.h"
-
-
-void mcnBreakpointsStaticLoad(char **row, struct mcnBreakpoints *ret)
-/* Load a row from mcnBreakpoints table into ret.  The contents of ret will
- * be replaced at the next call to this function. */
-{
-
-ret->chrom = row[0];
-ret->chromStart = sqlUnsigned(row[1]);
-ret->chromEnd = sqlUnsigned(row[2]);
-ret->name = row[3];
-ret->score = sqlUnsigned(row[4]);
-ret->caseId = row[5];
-ret->bpId = row[6];
-ret->trId = row[7];
-ret->trTxt = row[8];
-ret->tgId = row[9];
-ret->tgTxt = row[10];
-}
-
-struct mcnBreakpoints *mcnBreakpointsLoad(char **row)
-/* Load a mcnBreakpoints from row fetched with select * from mcnBreakpoints
- * from database.  Dispose of this with mcnBreakpointsFree(). */
-{
-struct mcnBreakpoints *ret;
-
-AllocVar(ret);
-ret->chrom = cloneString(row[0]);
-ret->chromStart = sqlUnsigned(row[1]);
-ret->chromEnd = sqlUnsigned(row[2]);
-ret->name = cloneString(row[3]);
-ret->score = sqlUnsigned(row[4]);
-ret->caseId = cloneString(row[5]);
-ret->bpId = cloneString(row[6]);
-ret->trId = cloneString(row[7]);
-ret->trTxt = cloneString(row[8]);
-ret->tgId = cloneString(row[9]);
-ret->tgTxt = cloneString(row[10]);
-return ret;
-}
-
-struct mcnBreakpoints *mcnBreakpointsLoadAll(char *fileName) 
-/* Load all mcnBreakpoints from a tab-separated file.
- * Dispose of this with mcnBreakpointsFreeList(). */
-{
-struct mcnBreakpoints *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[11];
-
-while (lineFileRow(lf, row))
-    {
-    el = mcnBreakpointsLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct mcnBreakpoints *mcnBreakpointsCommaIn(char **pS, struct mcnBreakpoints *ret)
-/* Create a mcnBreakpoints out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new mcnBreakpoints */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->chrom = sqlStringComma(&s);
-ret->chromStart = sqlUnsignedComma(&s);
-ret->chromEnd = sqlUnsignedComma(&s);
-ret->name = sqlStringComma(&s);
-ret->score = sqlUnsignedComma(&s);
-ret->caseId = sqlStringComma(&s);
-ret->bpId = sqlStringComma(&s);
-ret->trId = sqlStringComma(&s);
-ret->trTxt = sqlStringComma(&s);
-ret->tgId = sqlStringComma(&s);
-ret->tgTxt = sqlStringComma(&s);
-*pS = s;
-return ret;
-}
-
-void mcnBreakpointsFree(struct mcnBreakpoints **pEl)
-/* Free a single dynamically allocated mcnBreakpoints such as created
- * with mcnBreakpointsLoad(). */
-{
-struct mcnBreakpoints *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->chrom);
-freeMem(el->name);
-freeMem(el->caseId);
-freeMem(el->bpId);
-freeMem(el->trId);
-freeMem(el->trTxt);
-freeMem(el->tgId);
-freeMem(el->tgTxt);
-freez(pEl);
-}
-
-void mcnBreakpointsFreeList(struct mcnBreakpoints **pList)
-/* Free a list of dynamically allocated mcnBreakpoints's */
-{
-struct mcnBreakpoints *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    mcnBreakpointsFree(&el);
-    }
-*pList = NULL;
-}
-
-void mcnBreakpointsOutput(struct mcnBreakpoints *el, FILE *f, char sep, char lastSep) 
-/* Print out mcnBreakpoints.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->chrom);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->chromStart);
-fputc(sep,f);
-fprintf(f, "%u", el->chromEnd);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->name);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->score);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->caseId);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->bpId);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->trId);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->trTxt);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->tgId);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->tgTxt);
-if (sep == ',') fputc('"',f);
-fputc(lastSep,f);
-}
-