533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/ncbiRefSeqLink.c src/hg/lib/ncbiRefSeqLink.c
deleted file mode 100644
index 8828ef8..0000000
--- src/hg/lib/ncbiRefSeqLink.c
+++ /dev/null
@@ -1,262 +0,0 @@
-/* ncbiRefSeqLink.c was originally generated by the autoSql program, which also 
- * generated ncbiRefSeqLink.h and ncbiRefSeqLink.sql.  This module links the database and
- * the RAM representation of objects. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "ncbiRefSeqLink.h"
-
-
-
-char *ncbiRefSeqLinkCommaSepFieldNames = "id,status,name,product,mrnaAcc,protAcc,locusLinkId,omimId,hgnc,genbank,pseudo,gbkey,source,gene_biotype,gene_synonym,ncrna_class,note,description,externalId";
-
-void ncbiRefSeqLinkStaticLoad(char **row, struct ncbiRefSeqLink *ret)
-/* Load a row from ncbiRefSeqLink table into ret.  The contents of ret will
- * be replaced at the next call to this function. */
-{
-
-ret->id = row[0];
-ret->status = row[1];
-ret->name = row[2];
-ret->product = row[3];
-ret->mrnaAcc = row[4];
-ret->protAcc = row[5];
-ret->locusLinkId = row[6];
-ret->omimId = row[7];
-ret->hgnc = row[8];
-ret->genbank = row[9];
-ret->pseudo = row[10];
-ret->gbkey = row[11];
-ret->source = row[12];
-ret->gene_biotype = row[13];
-ret->gene_synonym = row[14];
-ret->ncrna_class = row[15];
-ret->note = row[16];
-ret->description = row[17];
-ret->externalId = row[18];
-}
-
-struct ncbiRefSeqLink *ncbiRefSeqLinkLoad(char **row)
-/* Load a ncbiRefSeqLink from row fetched with select * from ncbiRefSeqLink
- * from database.  Dispose of this with ncbiRefSeqLinkFree(). */
-{
-struct ncbiRefSeqLink *ret;
-
-AllocVar(ret);
-ret->id = cloneString(row[0]);
-ret->status = cloneString(row[1]);
-ret->name = cloneString(row[2]);
-ret->product = cloneString(row[3]);
-ret->mrnaAcc = cloneString(row[4]);
-ret->protAcc = cloneString(row[5]);
-ret->locusLinkId = cloneString(row[6]);
-ret->omimId = cloneString(row[7]);
-ret->hgnc = cloneString(row[8]);
-ret->genbank = cloneString(row[9]);
-ret->pseudo = cloneString(row[10]);
-ret->gbkey = cloneString(row[11]);
-ret->source = cloneString(row[12]);
-ret->gene_biotype = cloneString(row[13]);
-ret->gene_synonym = cloneString(row[14]);
-ret->ncrna_class = cloneString(row[15]);
-ret->note = cloneString(row[16]);
-ret->description = cloneString(row[17]);
-ret->externalId = cloneString(row[18]);
-return ret;
-}
-
-struct ncbiRefSeqLink *ncbiRefSeqLinkLoadAll(char *fileName) 
-/* Load all ncbiRefSeqLink from a whitespace-separated file.
- * Dispose of this with ncbiRefSeqLinkFreeList(). */
-{
-struct ncbiRefSeqLink *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[19];
-
-while (lineFileRow(lf, row))
-    {
-    el = ncbiRefSeqLinkLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct ncbiRefSeqLink *ncbiRefSeqLinkLoadAllByChar(char *fileName, char chopper) 
-/* Load all ncbiRefSeqLink from a chopper separated file.
- * Dispose of this with ncbiRefSeqLinkFreeList(). */
-{
-struct ncbiRefSeqLink *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[19];
-
-while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
-    {
-    el = ncbiRefSeqLinkLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct ncbiRefSeqLink *ncbiRefSeqLinkCommaIn(char **pS, struct ncbiRefSeqLink *ret)
-/* Create a ncbiRefSeqLink out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new ncbiRefSeqLink */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->id = sqlStringComma(&s);
-ret->status = sqlStringComma(&s);
-ret->name = sqlStringComma(&s);
-ret->product = sqlStringComma(&s);
-ret->mrnaAcc = sqlStringComma(&s);
-ret->protAcc = sqlStringComma(&s);
-ret->locusLinkId = sqlStringComma(&s);
-ret->omimId = sqlStringComma(&s);
-ret->hgnc = sqlStringComma(&s);
-ret->genbank = sqlStringComma(&s);
-ret->pseudo = sqlStringComma(&s);
-ret->gbkey = sqlStringComma(&s);
-ret->source = sqlStringComma(&s);
-ret->gene_biotype = sqlStringComma(&s);
-ret->gene_synonym = sqlStringComma(&s);
-ret->ncrna_class = sqlStringComma(&s);
-ret->note = sqlStringComma(&s);
-ret->description = sqlStringComma(&s);
-ret->externalId = sqlStringComma(&s);
-*pS = s;
-return ret;
-}
-
-void ncbiRefSeqLinkFree(struct ncbiRefSeqLink **pEl)
-/* Free a single dynamically allocated ncbiRefSeqLink such as created
- * with ncbiRefSeqLinkLoad(). */
-{
-struct ncbiRefSeqLink *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->id);
-freeMem(el->status);
-freeMem(el->name);
-freeMem(el->product);
-freeMem(el->mrnaAcc);
-freeMem(el->protAcc);
-freeMem(el->locusLinkId);
-freeMem(el->omimId);
-freeMem(el->hgnc);
-freeMem(el->genbank);
-freeMem(el->pseudo);
-freeMem(el->gbkey);
-freeMem(el->source);
-freeMem(el->gene_biotype);
-freeMem(el->gene_synonym);
-freeMem(el->ncrna_class);
-freeMem(el->note);
-freeMem(el->description);
-freeMem(el->externalId);
-freez(pEl);
-}
-
-void ncbiRefSeqLinkFreeList(struct ncbiRefSeqLink **pList)
-/* Free a list of dynamically allocated ncbiRefSeqLink's */
-{
-struct ncbiRefSeqLink *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    ncbiRefSeqLinkFree(&el);
-    }
-*pList = NULL;
-}
-
-void ncbiRefSeqLinkOutput(struct ncbiRefSeqLink *el, FILE *f, char sep, char lastSep) 
-/* Print out ncbiRefSeqLink.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->id);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->status);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->name);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->product);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->mrnaAcc);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->protAcc);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->locusLinkId);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->omimId);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->hgnc);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->genbank);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->pseudo);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->gbkey);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->source);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->gene_biotype);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->gene_synonym);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->ncrna_class);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->note);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->description);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->externalId);
-if (sep == ',') fputc('"',f);
-fputc(lastSep,f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-