533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/peptideAtlasPeptide.c src/hg/lib/peptideAtlasPeptide.c
deleted file mode 100644
index 029bf01..0000000
--- src/hg/lib/peptideAtlasPeptide.c
+++ /dev/null
@@ -1,141 +0,0 @@
-/* peptideAtlasPeptide.c was originally generated by the autoSql program, which also 
- * generated peptideAtlasPeptide.h and peptideAtlasPeptide.sql.  This module links the database and
- * the RAM representation of objects. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "peptideAtlasPeptide.h"
-
-
-
-char *peptideAtlasPeptideCommaSepFieldNames = "accession,sequence,sampleCount,hydrophobicity,proteotypicScore";
-
-void peptideAtlasPeptideStaticLoad(char **row, struct peptideAtlasPeptide *ret)
-/* Load a row from peptideAtlasPeptide table into ret.  The contents of ret will
- * be replaced at the next call to this function. */
-{
-
-ret->accession = row[0];
-ret->sequence = row[1];
-ret->sampleCount = sqlSigned(row[2]);
-ret->hydrophobicity = sqlFloat(row[3]);
-ret->proteotypicScore = sqlFloat(row[4]);
-}
-
-struct peptideAtlasPeptide *peptideAtlasPeptideLoad(char **row)
-/* Load a peptideAtlasPeptide from row fetched with select * from peptideAtlasPeptide
- * from database.  Dispose of this with peptideAtlasPeptideFree(). */
-{
-struct peptideAtlasPeptide *ret;
-
-AllocVar(ret);
-ret->accession = cloneString(row[0]);
-ret->sequence = cloneString(row[1]);
-ret->sampleCount = sqlSigned(row[2]);
-ret->hydrophobicity = sqlFloat(row[3]);
-ret->proteotypicScore = sqlFloat(row[4]);
-return ret;
-}
-
-struct peptideAtlasPeptide *peptideAtlasPeptideLoadAll(char *fileName) 
-/* Load all peptideAtlasPeptide from a whitespace-separated file.
- * Dispose of this with peptideAtlasPeptideFreeList(). */
-{
-struct peptideAtlasPeptide *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[5];
-
-while (lineFileRow(lf, row))
-    {
-    el = peptideAtlasPeptideLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct peptideAtlasPeptide *peptideAtlasPeptideLoadAllByChar(char *fileName, char chopper) 
-/* Load all peptideAtlasPeptide from a chopper separated file.
- * Dispose of this with peptideAtlasPeptideFreeList(). */
-{
-struct peptideAtlasPeptide *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[5];
-
-while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
-    {
-    el = peptideAtlasPeptideLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct peptideAtlasPeptide *peptideAtlasPeptideCommaIn(char **pS, struct peptideAtlasPeptide *ret)
-/* Create a peptideAtlasPeptide out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new peptideAtlasPeptide */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->accession = sqlStringComma(&s);
-ret->sequence = sqlStringComma(&s);
-ret->sampleCount = sqlSignedComma(&s);
-ret->hydrophobicity = sqlFloatComma(&s);
-ret->proteotypicScore = sqlFloatComma(&s);
-*pS = s;
-return ret;
-}
-
-void peptideAtlasPeptideFree(struct peptideAtlasPeptide **pEl)
-/* Free a single dynamically allocated peptideAtlasPeptide such as created
- * with peptideAtlasPeptideLoad(). */
-{
-struct peptideAtlasPeptide *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->accession);
-freeMem(el->sequence);
-freez(pEl);
-}
-
-void peptideAtlasPeptideFreeList(struct peptideAtlasPeptide **pList)
-/* Free a list of dynamically allocated peptideAtlasPeptide's */
-{
-struct peptideAtlasPeptide *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    peptideAtlasPeptideFree(&el);
-    }
-*pList = NULL;
-}
-
-void peptideAtlasPeptideOutput(struct peptideAtlasPeptide *el, FILE *f, char sep, char lastSep) 
-/* Print out peptideAtlasPeptide.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->accession);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->sequence);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%d", el->sampleCount);
-fputc(sep,f);
-fprintf(f, "%g", el->hydrophobicity);
-fputc(sep,f);
-fprintf(f, "%g", el->proteotypicScore);
-fputc(lastSep,f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-