533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/rnaSecStr.c src/hg/lib/rnaSecStr.c
deleted file mode 100644
index f73fc00..0000000
--- src/hg/lib/rnaSecStr.c
+++ /dev/null
@@ -1,192 +0,0 @@
-/* rnaSecStr.c was originally generated by the autoSql program, which also 
- * generated rnaSecStr.h and rnaSecStr.sql.  This module links the database and
- * the RAM representation of objects. */
-
-/* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "rnaSecStr.h"
-
-
-struct rnaSecStr *rnaSecStrLoad(char **row)
-/* Load a rnaSecStr from row fetched with select * from rnaSecStr
- * from database. Ignores conf column if present.  Dispose of this with rnaSecStrFree(). */
-{
-struct rnaSecStr *ret;
-
-AllocVar(ret);
-ret->size = sqlUnsigned(row[6]);
-ret->chrom = cloneString(row[0]);
-ret->chromStart = sqlUnsigned(row[1]);
-ret->chromEnd = sqlUnsigned(row[2]);
-ret->name = cloneString(row[3]);
-ret->score = sqlUnsigned(row[4]);
-strcpy(ret->strand, row[5]);
-ret->secStr = cloneString(row[7]);
-return ret;
-}
-
-struct rnaSecStr *rnaSecStrLoadConf(char **row)
-/* Load a rnaSecStr from row fetched with select * from rnaSecStr
- * from database. Loads conf column.  Dispose of this with rnaSecStrFree(). */
-{
-struct rnaSecStr *ret;
-
-AllocVar(ret);
-ret->size = sqlUnsigned(row[6]);
-ret->chrom = cloneString(row[0]);
-ret->chromStart = sqlUnsigned(row[1]);
-ret->chromEnd = sqlUnsigned(row[2]);
-ret->name = cloneString(row[3]);
-ret->score = sqlUnsigned(row[4]);
-strcpy(ret->strand, row[5]);
-ret->secStr = cloneString(row[7]);
-{
-int sizeOne;
-sqlDoubleDynamicArray(row[8], &ret->conf, &sizeOne);
-assert(sizeOne == ret->size);
-}
-return ret;
-}
-
-struct rnaSecStr *rnaSecStrLoadAll(char *fileName) 
-/* Load all rnaSecStr from a whitespace-separated file.
- * Dispose of this with rnaSecStrFreeList(). */
-{
-struct rnaSecStr *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[9];
-
-while (lineFileRow(lf, row))
-    {
-    el = rnaSecStrLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct rnaSecStr *rnaSecStrLoadAllByChar(char *fileName, char chopper) 
-/* Load all rnaSecStr from a chopper separated file.
- * Dispose of this with rnaSecStrFreeList(). */
-{
-struct rnaSecStr *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[9];
-
-while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
-    {
-    el = rnaSecStrLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct rnaSecStr *rnaSecStrCommaIn(char **pS, struct rnaSecStr *ret)
-/* Create a rnaSecStr out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new rnaSecStr */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->chrom = sqlStringComma(&s);
-ret->chromStart = sqlUnsignedComma(&s);
-ret->chromEnd = sqlUnsignedComma(&s);
-ret->name = sqlStringComma(&s);
-ret->score = sqlUnsignedComma(&s);
-sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
-ret->size = sqlUnsignedComma(&s);
-ret->secStr = sqlStringComma(&s);
-{
-int i;
-s = sqlEatChar(s, '{');
-AllocArray(ret->conf, ret->size);
-for (i=0; i<ret->size; ++i)
-    {
-    ret->conf[i] = sqlDoubleComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-*pS = s;
-return ret;
-}
-
-void rnaSecStrFree(struct rnaSecStr **pEl)
-/* Free a single dynamically allocated rnaSecStr such as created
- * with rnaSecStrLoad(). */
-{
-struct rnaSecStr *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->chrom);
-freeMem(el->name);
-freeMem(el->secStr);
-freeMem(el->conf);
-freez(pEl);
-}
-
-void rnaSecStrFreeList(struct rnaSecStr **pList)
-/* Free a list of dynamically allocated rnaSecStr's */
-{
-struct rnaSecStr *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    rnaSecStrFree(&el);
-    }
-*pList = NULL;
-}
-
-void rnaSecStrOutput(struct rnaSecStr *el, FILE *f, char sep, char lastSep) 
-/* Print out rnaSecStr.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->chrom);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->chromStart);
-fputc(sep,f);
-fprintf(f, "%u", el->chromEnd);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->name);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->score);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->strand);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->size);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->secStr);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->size; ++i)
-    {
-    fprintf(f, "%g", el->conf[i]);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(lastSep,f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-