533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/snp125CodingCoordless.c src/hg/lib/snp125CodingCoordless.c
deleted file mode 100644
index 4e92475..0000000
--- src/hg/lib/snp125CodingCoordless.c
+++ /dev/null
@@ -1,258 +0,0 @@
-/* snp125CodingCoordless.c was originally generated by the autoSql program, which also 
- * generated snp125CodingCoordless.h and snp125CodingCoordless.sql.  This module links the database and
- * the RAM representation of objects. */
-
-/* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "snp125CodingCoordless.h"
-
-
-/* definitions for frame column */
-static char *values_frame[] = {"1", "2", "3", "n/a", NULL};
-static struct hash *valhash_frame = NULL;
-
-struct snp125CodingCoordless *snp125CodingCoordlessLoad(char **row)
-/* Load a snp125CodingCoordless from row fetched with select * from snp125CodingCoordless
- * from database.  Dispose of this with snp125CodingCoordlessFree(). */
-{
-struct snp125CodingCoordless *ret;
-
-AllocVar(ret);
-ret->alleleCount = sqlSigned(row[3]);
-ret->name = cloneString(row[0]);
-ret->transcript = cloneString(row[1]);
-ret->frame = sqlEnumParse(row[2], values_frame, &valhash_frame);
-{
-int sizeOne;
-sqlUshortDynamicArray(row[4], &ret->funcCodes, &sizeOne);
-assert(sizeOne == ret->alleleCount);
-}
-{
-int sizeOne;
-sqlStringDynamicArray(row[5], &ret->alleles, &sizeOne);
-assert(sizeOne == ret->alleleCount);
-}
-{
-int sizeOne;
-sqlStringDynamicArray(row[6], &ret->codons, &sizeOne);
-assert(sizeOne == ret->alleleCount);
-}
-{
-int sizeOne;
-sqlStringDynamicArray(row[7], &ret->peptides, &sizeOne);
-assert(sizeOne == ret->alleleCount);
-}
-return ret;
-}
-
-struct snp125CodingCoordless *snp125CodingCoordlessLoadAll(char *fileName) 
-/* Load all snp125CodingCoordless from a whitespace-separated file.
- * Dispose of this with snp125CodingCoordlessFreeList(). */
-{
-struct snp125CodingCoordless *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[8];
-
-while (lineFileRow(lf, row))
-    {
-    el = snp125CodingCoordlessLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct snp125CodingCoordless *snp125CodingCoordlessLoadAllByChar(char *fileName, char chopper) 
-/* Load all snp125CodingCoordless from a chopper separated file.
- * Dispose of this with snp125CodingCoordlessFreeList(). */
-{
-struct snp125CodingCoordless *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[8];
-
-while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
-    {
-    el = snp125CodingCoordlessLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct snp125CodingCoordless *snp125CodingCoordlessCommaIn(char **pS, struct snp125CodingCoordless *ret)
-/* Create a snp125CodingCoordless out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new snp125CodingCoordless */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->name = sqlStringComma(&s);
-ret->transcript = sqlStringComma(&s);
-ret->frame = sqlEnumComma(&s, values_frame, &valhash_frame);
-ret->alleleCount = sqlSignedComma(&s);
-{
-int i;
-s = sqlEatChar(s, '{');
-AllocArray(ret->funcCodes, ret->alleleCount);
-for (i=0; i<ret->alleleCount; ++i)
-    {
-    ret->funcCodes[i] = sqlUnsignedComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-{
-int i;
-s = sqlEatChar(s, '{');
-AllocArray(ret->alleles, ret->alleleCount);
-for (i=0; i<ret->alleleCount; ++i)
-    {
-    ret->alleles[i] = sqlStringComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-{
-int i;
-s = sqlEatChar(s, '{');
-AllocArray(ret->codons, ret->alleleCount);
-for (i=0; i<ret->alleleCount; ++i)
-    {
-    ret->codons[i] = sqlStringComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-{
-int i;
-s = sqlEatChar(s, '{');
-AllocArray(ret->peptides, ret->alleleCount);
-for (i=0; i<ret->alleleCount; ++i)
-    {
-    ret->peptides[i] = sqlStringComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-*pS = s;
-return ret;
-}
-
-void snp125CodingCoordlessFree(struct snp125CodingCoordless **pEl)
-/* Free a single dynamically allocated snp125CodingCoordless such as created
- * with snp125CodingCoordlessLoad(). */
-{
-struct snp125CodingCoordless *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->name);
-freeMem(el->transcript);
-freeMem(el->funcCodes);
-/* All strings in alleles are allocated at once, so only need to free first. */
-if (el->alleles != NULL)
-    freeMem(el->alleles[0]);
-freeMem(el->alleles);
-/* All strings in codons are allocated at once, so only need to free first. */
-if (el->codons != NULL)
-    freeMem(el->codons[0]);
-freeMem(el->codons);
-/* All strings in peptides are allocated at once, so only need to free first. */
-if (el->peptides != NULL)
-    freeMem(el->peptides[0]);
-freeMem(el->peptides);
-freez(pEl);
-}
-
-void snp125CodingCoordlessFreeList(struct snp125CodingCoordless **pList)
-/* Free a list of dynamically allocated snp125CodingCoordless's */
-{
-struct snp125CodingCoordless *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    snp125CodingCoordlessFree(&el);
-    }
-*pList = NULL;
-}
-
-void snp125CodingCoordlessOutput(struct snp125CodingCoordless *el, FILE *f, char sep, char lastSep) 
-/* Print out snp125CodingCoordless.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->name);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->transcript);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-sqlEnumPrint(f, el->frame, values_frame);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%d", el->alleleCount);
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->alleleCount; ++i)
-    {
-    fprintf(f, "%u", el->funcCodes[i]);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->alleleCount; ++i)
-    {
-    if (sep == ',') fputc('"',f);
-    fprintf(f, "%s", el->alleles[i]);
-    if (sep == ',') fputc('"',f);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->alleleCount; ++i)
-    {
-    if (sep == ',') fputc('"',f);
-    fprintf(f, "%s", el->codons[i]);
-    if (sep == ',') fputc('"',f);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->alleleCount; ++i)
-    {
-    if (sep == ',') fputc('"',f);
-    fprintf(f, "%s", el->peptides[i]);
-    if (sep == ',') fputc('"',f);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(lastSep,f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-