533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/lib/stsInfoRat.c src/hg/lib/stsInfoRat.c deleted file mode 100644 index 0c3292a..0000000 --- src/hg/lib/stsInfoRat.c +++ /dev/null @@ -1,265 +0,0 @@ -/* stsInfoRat.c was originally generated by the autoSql program, which also - * generated stsInfoRat.h and stsInfoRat.sql. This module links the database and - * the RAM representation of objects. */ - -/* Copyright (C) 2014 The Regents of the University of California - * See README in this or parent directory for licensing information. */ - -#include "common.h" -#include "linefile.h" -#include "dystring.h" -#include "jksql.h" -#include "stsInfoRat.h" - - -void stsInfoRatStaticLoad(char **row, struct stsInfoRat *ret) -/* Load a row from stsInfoRat table into ret. The contents of ret will - * be replaced at the next call to this function. */ -{ - -ret->identNo = sqlUnsigned(row[0]); -ret->name = row[1]; -ret->RGDId = sqlUnsigned(row[2]); -ret->RGDName = row[3]; -ret->UiStsId = sqlUnsigned(row[4]); -ret->nameCount = sqlUnsigned(row[5]); -ret->alias = row[6]; -ret->primer1 = row[7]; -ret->primer2 = row[8]; -ret->distance = row[9]; -ret->sequence = sqlUnsigned(row[10]); -ret->organis = row[11]; -ret->fhhName = row[12]; -ret->fhhChr = row[13]; -ret->fhhGeneticPos = atof(row[14]); -ret->shrspName = row[15]; -ret->shrspChr = row[16]; -ret->shrspGeneticPos = atof(row[17]); -ret->rhName = row[18]; -ret->rhChr = row[19]; -ret->rhGeneticPos = atof(row[20]); -ret->RHLOD = atof(row[21]); -ret->GeneName = row[22]; -ret->GeneID = row[23]; -ret->clone = row[24]; -} - -struct stsInfoRat *stsInfoRatLoad(char **row) -/* Load a stsInfoRat from row fetched with select * from stsInfoRat - * from database. Dispose of this with stsInfoRatFree(). */ -{ -struct stsInfoRat *ret; - -AllocVar(ret); -ret->identNo = sqlUnsigned(row[0]); -ret->name = cloneString(row[1]); -ret->RGDId = sqlUnsigned(row[2]); -ret->RGDName = cloneString(row[3]); -ret->UiStsId = sqlUnsigned(row[4]); -ret->nameCount = sqlUnsigned(row[5]); -ret->alias = cloneString(row[6]); -ret->primer1 = cloneString(row[7]); -ret->primer2 = cloneString(row[8]); -ret->distance = cloneString(row[9]); -ret->sequence = sqlUnsigned(row[10]); -ret->organis = cloneString(row[11]); -ret->fhhName = cloneString(row[12]); -ret->fhhChr = cloneString(row[13]); -ret->fhhGeneticPos = atof(row[14]); -ret->shrspName = cloneString(row[15]); -ret->shrspChr = cloneString(row[16]); -ret->shrspGeneticPos = atof(row[17]); -ret->rhName = cloneString(row[18]); -ret->rhChr = cloneString(row[19]); -ret->rhGeneticPos = atof(row[20]); -ret->RHLOD = atof(row[21]); -ret->GeneName = cloneString(row[22]); -ret->GeneID = cloneString(row[23]); -ret->clone = cloneString(row[24]); -return ret; -} - -struct stsInfoRat *stsInfoRatLoadAll(char *fileName) -/* Load all stsInfoRat from a tab-separated file. - * Dispose of this with stsInfoRatFreeList(). */ -{ -struct stsInfoRat *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[25]; - -while (lineFileRow(lf, row)) - { - el = stsInfoRatLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct stsInfoRat *stsInfoRatCommaIn(char **pS, struct stsInfoRat *ret) -/* Create a stsInfoRat out of a comma separated string. - * This will fill in ret if non-null, otherwise will - * return a new stsInfoRat */ -{ -char *s = *pS; - -if (ret == NULL) - AllocVar(ret); -ret->identNo = sqlUnsignedComma(&s); -ret->name = sqlStringComma(&s); -ret->RGDId = sqlUnsignedComma(&s); -ret->RGDName = sqlStringComma(&s); -ret->UiStsId = sqlUnsignedComma(&s); -ret->nameCount = sqlUnsignedComma(&s); -ret->alias = sqlStringComma(&s); -ret->primer1 = sqlStringComma(&s); -ret->primer2 = sqlStringComma(&s); -ret->distance = sqlStringComma(&s); -ret->sequence = sqlUnsignedComma(&s); -ret->organis = sqlStringComma(&s); -ret->fhhName = sqlStringComma(&s); -ret->fhhChr = sqlStringComma(&s); -ret->fhhGeneticPos = sqlFloatComma(&s); -ret->shrspName = sqlStringComma(&s); -ret->shrspChr = sqlStringComma(&s); -ret->shrspGeneticPos = sqlFloatComma(&s); -ret->rhName = sqlStringComma(&s); -ret->rhChr = sqlStringComma(&s); -ret->rhGeneticPos = sqlFloatComma(&s); -ret->RHLOD = sqlFloatComma(&s); -ret->GeneName = sqlStringComma(&s); -ret->GeneID = sqlStringComma(&s); -ret->clone = sqlStringComma(&s); -*pS = s; -return ret; -} - -void stsInfoRatFree(struct stsInfoRat **pEl) -/* Free a single dynamically allocated stsInfoRat such as created - * with stsInfoRatLoad(). */ -{ -struct stsInfoRat *el; - -if ((el = *pEl) == NULL) return; -freeMem(el->name); -freeMem(el->RGDName); -freeMem(el->alias); -freeMem(el->primer1); -freeMem(el->primer2); -freeMem(el->distance); -freeMem(el->organis); -freeMem(el->fhhName); -freeMem(el->fhhChr); -freeMem(el->shrspName); -freeMem(el->shrspChr); -freeMem(el->rhName); -freeMem(el->rhChr); -freeMem(el->GeneName); -freeMem(el->GeneID); -freeMem(el->clone); -freez(pEl); -} - -void stsInfoRatFreeList(struct stsInfoRat **pList) -/* Free a list of dynamically allocated stsInfoRat's */ -{ -struct stsInfoRat *el, *next; - -for (el = *pList; el != NULL; el = next) - { - next = el->next; - stsInfoRatFree(&el); - } -*pList = NULL; -} - -void stsInfoRatOutput(struct stsInfoRat *el, FILE *f, char sep, char lastSep) -/* Print out stsInfoRat. Separate fields with sep. Follow last field with lastSep. */ -{ -fprintf(f, "%u", el->identNo); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->name); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->RGDId); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->RGDName); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->UiStsId); -fputc(sep,f); -fprintf(f, "%u", el->nameCount); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->alias); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->primer1); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->primer2); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->distance); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->sequence); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->organis); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->fhhName); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->fhhChr); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%f", el->fhhGeneticPos); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->shrspName); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->shrspChr); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%f", el->shrspGeneticPos); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->rhName); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->rhChr); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%f", el->rhGeneticPos); -fputc(sep,f); -fprintf(f, "%f", el->RHLOD); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->GeneName); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->GeneID); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->clone); -if (sep == ',') fputc('"',f); -fputc(lastSep,f); -} - -/* -------------------------------- End autoSql Generated Code -------------------------------- */ -