b30a73b6c5f4aaf404e7b670c0142178b64b6424
braney
  Mon Sep 27 17:37:11 2021 -0700
temporarily remove hg/lib/tests annogratorTest while we consider whether
we're upgrading hg19 knownGene

diff --git src/hg/lib/tests/makefile src/hg/lib/tests/makefile
index 2b1b5ab..5edd60d 100644
--- src/hg/lib/tests/makefile
+++ src/hg/lib/tests/makefile
@@ -1,91 +1,92 @@
 kentSrc = ../../..
 include ../../../inc/common.mk
 
 L += ${MYSQLLIBS} -lm
 MYLIBDIR = ../../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a
 BIN_DIR = bin/${MACHTYPE}
 
 all: 	${BIN_DIR}/genePredTester \
 	${BIN_DIR}/pslReaderTester \
-	${BIN_DIR}/annoGratorTester \
+#	${BIN_DIR}/annoGratorTester \
 	${BIN_DIR}/binTest \
 	${BIN_DIR}/customTrackTester \
 	${BIN_DIR}/hgvsTester \
 	${BIN_DIR}/sqlCheck 
 
-test: binTest spDbTest hdbTest genePredTest pslReaderTest annoGratorTest customTrackTest hgvsTest
+#test: binTest spDbTest hdbTest genePredTest pslReaderTest annoGratorTest customTrackTest hgvsTest
+test: binTest spDbTest hdbTest genePredTest pslReaderTest customTrackTest hgvsTest
 	rm -r output
 	echo tested all
 
 mkdirs:
 	@${MKDIR} output ${BIN_DIR}
 
 loaders:
 	rm -f loader
 	ln -s ${CGI_BIN}/loader .
 
 spDbTest: spDbTest.o ${MYLIBS} mkdirs
 	${CC} ${COPT} -o ${BIN_DIR}/spDbTest spDbTest.o ${MYLIBS} $L
 	${BIN_DIR}/spDbTest sp121210 Q9FFH7 > output/spDbTest
 	${BIN_DIR}/spDbTest sp121210 P29312 >> output/spDbTest
 	diff expected/spDbTest output/spDbTest
 
 hdbTest: hdbTest.o ${MYLIBS} mkdirs
 	${CC} ${COPT} -o ${BIN_DIR}/hdbTest hdbTest.o ${MYLIBS} $L
 	${BIN_DIR}/hdbTest > output/hdbTest
 	diff expected/hdbTest output/hdbTest
 
 genePredTest: ${BIN_DIR}/genePredTester mkdirs
 	${MAKE} -f genePredTests.mk test
 
 pslReaderTest: ${BIN_DIR}/pslReaderTester mkdirs
 	${MAKE} -f pslReaderTests.mk test
 
-annoGratorTest: ${BIN_DIR}/annoGratorTester mkdirs
-	${MAKE} -f annoGratorTests.mk test
+#annoGratorTest: ${BIN_DIR}/annoGratorTester mkdirs
+#	${MAKE} -f annoGratorTests.mk test
 
 customTrackTest: ${BIN_DIR}/customTrackTester loaders mkdirs
 	${MAKE} -f customTrackTests.mk test BIN_DIR=${BIN_DIR} OUT_DIR=output
 	rm -f loader
 
 hgvsTest: ${BIN_DIR}/hgvsTester mkdirs
 	${MAKE} -f hgvsTests.mk test
 
 binTest: mkdirs ${BIN_DIR}/binTest
 	@./binTest.sh
 
 sqlCheck: ${BIN_DIR}/sqlCheck mkdirs
 	${MAKE} -f sqlCheck.mk test BIN_DIR=${BIN_DIR} OUT_DIR=output
 
 
 ${BIN_DIR}/genePredTester: genePredTester.o ${MYLIBS}
 	@${MKDIR} ${BIN_DIR}
 	${CC} ${COPT} ${CFLAGS} -o $@ $< ${MYLIBS} ${L}
 
 ${BIN_DIR}/pslReaderTester: pslReaderTester.o ${MYLIBS}
 	@${MKDIR} ${BIN_DIR}
 	${CC} ${COPT} ${CFLAGS} -o $@ $< ${MYLIBS} ${L}
 
 ${BIN_DIR}/annoGratorTester: annoGratorTester.o ${MYLIBS}
 	@${MKDIR} ${BIN_DIR}
 	${CC} ${COPT} ${CFLAGS} -o $@ $< ${MYLIBS} ${L}
 
 ${BIN_DIR}/hgvsTester: hgvsTester.o ${MYLIBS}
 	@${MKDIR} ${BIN_DIR}
 	${CC} ${COPT} ${CFLAGS} -o $@ $< ${MYLIBS} ${L}
 
 ${BIN_DIR}/binTest: binTest.o ${MYLIBS}
 	@${MKDIR} ${BIN_DIR}
 	${CC} ${COPT} ${CFLAGS} -o $@ $< ${MYLIBS} ${L}
 
 ${BIN_DIR}/customTrackTester: customTrackTester.o ${MYLIBS}
 	@${MKDIR} ${BIN_DIR}
 	${CC} ${COPT} ${CFLAGS} -o $@ $< ${MYLIBS} ${L}
 
 ${BIN_DIR}/sqlCheck: sqlCheck.o ${MYLIBS}
 	@${MKDIR} ${BIN_DIR}
 	${CC} ${COPT} ${CFLAGS} -o $@ $< ${MYLIBS} ${L}
 
 clean:
 	rm -rf *.o bin output *.tmp loader udcCache