533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/lib/transMapInfo.c src/hg/lib/transMapInfo.c deleted file mode 100644 index e08c302..0000000 --- src/hg/lib/transMapInfo.c +++ /dev/null @@ -1,163 +0,0 @@ -/* transMapInfo.c was originally generated by the autoSql program, which also - * generated transMapInfo.h and transMapInfo.sql. This module links the database and - * the RAM representation of objects. */ - -/* Copyright (C) 2014 The Regents of the University of California - * See README in this or parent directory for licensing information. */ - -#include "common.h" -#include "linefile.h" -#include "dystring.h" -#include "jksql.h" -#include "transMapInfo.h" - -char *transMapInfoCommaSepFieldNames = "mappedId,srcDb,srcId,mappingId,chainSubset"; - -/* definitions for chainSubset column */ -static char *values_chainSubset[] = {"unknown", "all", "syn", "rbest", NULL}; -static struct hash *valhash_chainSubset = NULL; - -void transMapInfoStaticLoad(char **row, struct transMapInfo *ret) -/* Load a row from transMapInfo table into ret. The contents of ret will - * be replaced at the next call to this function. */ -{ - -ret->mappedId = row[0]; -safecpy(ret->srcDb, sizeof(ret->srcDb), row[1]); -ret->srcId = row[2]; -ret->mappingId = row[3]; -ret->chainSubset = sqlEnumParse(row[4], values_chainSubset, &valhash_chainSubset); -} - -struct transMapInfo *transMapInfoLoad(char **row) -/* Load a transMapInfo from row fetched with select * from transMapInfo - * from database. Dispose of this with transMapInfoFree(). */ -{ -struct transMapInfo *ret; - -AllocVar(ret); -ret->mappedId = cloneString(row[0]); -safecpy(ret->srcDb, sizeof(ret->srcDb), row[1]); -ret->srcId = cloneString(row[2]); -ret->mappingId = cloneString(row[3]); -ret->chainSubset = sqlEnumParse(row[4], values_chainSubset, &valhash_chainSubset); -return ret; -} - -struct transMapInfo *transMapInfoLoadAll(char *fileName) -/* Load all transMapInfo from a whitespace-separated file. - * Dispose of this with transMapInfoFreeList(). */ -{ -struct transMapInfo *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[5]; - -while (lineFileRow(lf, row)) - { - el = transMapInfoLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct transMapInfo *transMapInfoLoadAllByChar(char *fileName, char chopper) -/* Load all transMapInfo from a chopper separated file. - * Dispose of this with transMapInfoFreeList(). */ -{ -struct transMapInfo *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[5]; - -while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) - { - el = transMapInfoLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct transMapInfo *transMapInfoCommaIn(char **pS, struct transMapInfo *ret) -/* Create a transMapInfo out of a comma separated string. - * This will fill in ret if non-null, otherwise will - * return a new transMapInfo */ -{ -char *s = *pS; - -if (ret == NULL) - AllocVar(ret); -ret->mappedId = sqlStringComma(&s); -sqlFixedStringComma(&s, ret->srcDb, sizeof(ret->srcDb)); -ret->srcId = sqlStringComma(&s); -ret->mappingId = sqlStringComma(&s); -ret->chainSubset = sqlEnumComma(&s, values_chainSubset, &valhash_chainSubset); -*pS = s; -return ret; -} - -void transMapInfoFree(struct transMapInfo **pEl) -/* Free a single dynamically allocated transMapInfo such as created - * with transMapInfoLoad(). */ -{ -struct transMapInfo *el; - -if ((el = *pEl) == NULL) return; -freeMem(el->mappedId); -freeMem(el->srcId); -freeMem(el->mappingId); -freez(pEl); -} - -void transMapInfoFreeList(struct transMapInfo **pList) -/* Free a list of dynamically allocated transMapInfo's */ -{ -struct transMapInfo *el, *next; - -for (el = *pList; el != NULL; el = next) - { - next = el->next; - transMapInfoFree(&el); - } -*pList = NULL; -} - -void transMapInfoOutput(struct transMapInfo *el, FILE *f, char sep, char lastSep) -/* Print out transMapInfo. Separate fields with sep. Follow last field with lastSep. */ -{ -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->mappedId); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->srcDb); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->srcId); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->mappingId); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -sqlEnumPrint(f, el->chainSubset, values_chainSubset); -if (sep == ',') fputc('"',f); -fputc(lastSep,f); -} - -/* -------------------------------- End autoSql Generated Code -------------------------------- */ - -struct transMapInfo *transMapInfoQuery(struct sqlConnection *conn, - char *table, char *mappedId) -/* load a single transMapInfo object for an mapped id from a table, - * or error if not found */ -{ -return sqlQueryObjs(conn, (sqlLoadFunc)transMapInfoLoad, - sqlQueryMust|sqlQuerySingle, - "SELECT %-s FROM %s WHERE mappedId = \"%s\"", - transMapInfoCommaSepFieldNames, table, mappedId); -}