533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/lib/transMapSrc.c src/hg/lib/transMapSrc.c deleted file mode 100644 index b57ef80..0000000 --- src/hg/lib/transMapSrc.c +++ /dev/null @@ -1,173 +0,0 @@ -/* transMapSrc.c was originally generated by the autoSql program, which also - * generated transMapSrc.h and transMapSrc.sql. This module links the database and - * the RAM representation of objects. */ - -/* Copyright (C) 2014 The Regents of the University of California - * See README in this or parent directory for licensing information. */ - -#include "common.h" -#include "linefile.h" -#include "dystring.h" -#include "jksql.h" -#include "transMapSrc.h" - - -char *transMapSrcCommaSepFieldNames = "db,id,chrom,chromStart,chromEnd,strand,ident,aligned"; - -void transMapSrcStaticLoad(char **row, struct transMapSrc *ret) -/* Load a row from transMapSrc table into ret. The contents of ret will - * be replaced at the next call to this function. */ -{ - -safecpy(ret->db, sizeof(ret->db), row[0]); -ret->id = row[1]; -ret->chrom = row[2]; -ret->chromStart = sqlUnsigned(row[3]); -ret->chromEnd = sqlUnsigned(row[4]); -ret->strand = row[5][0]; -ret->ident = sqlFloat(row[6]); -ret->aligned = sqlFloat(row[7]); -} - -struct transMapSrc *transMapSrcLoad(char **row) -/* Load a transMapSrc from row fetched with select * from transMapSrc - * from database. Dispose of this with transMapSrcFree(). */ -{ -struct transMapSrc *ret; - -AllocVar(ret); -safecpy(ret->db, sizeof(ret->db), row[0]); -ret->id = cloneString(row[1]); -ret->chrom = cloneString(row[2]); -ret->chromStart = sqlUnsigned(row[3]); -ret->chromEnd = sqlUnsigned(row[4]); -ret->strand = row[5][0]; -ret->ident = sqlFloat(row[6]); -ret->aligned = sqlFloat(row[7]); -return ret; -} - -struct transMapSrc *transMapSrcLoadAll(char *fileName) -/* Load all transMapSrc from a whitespace-separated file. - * Dispose of this with transMapSrcFreeList(). */ -{ -struct transMapSrc *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[8]; - -while (lineFileRow(lf, row)) - { - el = transMapSrcLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct transMapSrc *transMapSrcLoadAllByChar(char *fileName, char chopper) -/* Load all transMapSrc from a chopper separated file. - * Dispose of this with transMapSrcFreeList(). */ -{ -struct transMapSrc *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[8]; - -while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) - { - el = transMapSrcLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct transMapSrc *transMapSrcCommaIn(char **pS, struct transMapSrc *ret) -/* Create a transMapSrc out of a comma separated string. - * This will fill in ret if non-null, otherwise will - * return a new transMapSrc */ -{ -char *s = *pS; - -if (ret == NULL) - AllocVar(ret); -sqlFixedStringComma(&s, ret->db, sizeof(ret->db)); -ret->id = sqlStringComma(&s); -ret->chrom = sqlStringComma(&s); -ret->chromStart = sqlUnsignedComma(&s); -ret->chromEnd = sqlUnsignedComma(&s); -sqlFixedStringComma(&s, &(ret->strand), sizeof(ret->strand)); -ret->ident = sqlFloatComma(&s); -ret->aligned = sqlFloatComma(&s); -*pS = s; -return ret; -} - -void transMapSrcFree(struct transMapSrc **pEl) -/* Free a single dynamically allocated transMapSrc such as created - * with transMapSrcLoad(). */ -{ -struct transMapSrc *el; - -if ((el = *pEl) == NULL) return; -freeMem(el->id); -freeMem(el->chrom); -freez(pEl); -} - -void transMapSrcFreeList(struct transMapSrc **pList) -/* Free a list of dynamically allocated transMapSrc's */ -{ -struct transMapSrc *el, *next; - -for (el = *pList; el != NULL; el = next) - { - next = el->next; - transMapSrcFree(&el); - } -*pList = NULL; -} - -void transMapSrcOutput(struct transMapSrc *el, FILE *f, char sep, char lastSep) -/* Print out transMapSrc. Separate fields with sep. Follow last field with lastSep. */ -{ -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->db); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->id); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->chrom); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->chromStart); -fputc(sep,f); -fprintf(f, "%u", el->chromEnd); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%c", el->strand); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%g", el->ident); -fputc(sep,f); -fprintf(f, "%g", el->aligned); -fputc(lastSep,f); -} - -/* -------------------------------- End autoSql Generated Code -------------------------------- */ - - -struct transMapSrc *transMapSrcQuery(struct sqlConnection *srcConn, - char *table, char *srcDb, char *srcId) -/* load a single transMapSrc object for an srcDb and srcId from a table, - * or error if not found */ -{ -return sqlQueryObjs(srcConn, (sqlLoadFunc)transMapSrcLoad, - sqlQueryMust|sqlQuerySingle, - "SELECT %-s FROM %s WHERE (db=\"%s\") and (id = \"%s\")", - transMapSrcCommaSepFieldNames, table, srcDb, srcId); -}