533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/lib/transRegCodeProbe.c src/hg/lib/transRegCodeProbe.c deleted file mode 100644 index 3acb1f0..0000000 --- src/hg/lib/transRegCodeProbe.c +++ /dev/null @@ -1,190 +0,0 @@ -/* transRegCodeProbe.c was originally generated by the autoSql program, which also - * generated transRegCodeProbe.h and transRegCodeProbe.sql. This module links the database and - * the RAM representation of objects. */ - -/* Copyright (C) 2014 The Regents of the University of California - * See README in this or parent directory for licensing information. */ - -#include "common.h" -#include "linefile.h" -#include "dystring.h" -#include "jksql.h" -#include "transRegCodeProbe.h" - - -struct transRegCodeProbe *transRegCodeProbeLoad(char **row) -/* Load a transRegCodeProbe from row fetched with select * from transRegCodeProbe - * from database. Dispose of this with transRegCodeProbeFree(). */ -{ -struct transRegCodeProbe *ret; - -AllocVar(ret); -ret->tfCount = sqlUnsigned(row[4]); -ret->chrom = cloneString(row[0]); -ret->chromStart = sqlUnsigned(row[1]); -ret->chromEnd = sqlUnsigned(row[2]); -ret->name = cloneString(row[3]); -{ -int sizeOne; -sqlStringDynamicArray(row[5], &ret->tfList, &sizeOne); -assert(sizeOne == ret->tfCount); -} -{ -int sizeOne; -sqlFloatDynamicArray(row[6], &ret->bindVals, &sizeOne); -assert(sizeOne == ret->tfCount); -} -return ret; -} - -struct transRegCodeProbe *transRegCodeProbeLoadAll(char *fileName) -/* Load all transRegCodeProbe from a whitespace-separated file. - * Dispose of this with transRegCodeProbeFreeList(). */ -{ -struct transRegCodeProbe *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[7]; - -while (lineFileRow(lf, row)) - { - el = transRegCodeProbeLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct transRegCodeProbe *transRegCodeProbeLoadAllByChar(char *fileName, char chopper) -/* Load all transRegCodeProbe from a chopper separated file. - * Dispose of this with transRegCodeProbeFreeList(). */ -{ -struct transRegCodeProbe *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[7]; - -while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) - { - el = transRegCodeProbeLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct transRegCodeProbe *transRegCodeProbeCommaIn(char **pS, struct transRegCodeProbe *ret) -/* Create a transRegCodeProbe out of a comma separated string. - * This will fill in ret if non-null, otherwise will - * return a new transRegCodeProbe */ -{ -char *s = *pS; - -if (ret == NULL) - AllocVar(ret); -ret->chrom = sqlStringComma(&s); -ret->chromStart = sqlUnsignedComma(&s); -ret->chromEnd = sqlUnsignedComma(&s); -ret->name = sqlStringComma(&s); -ret->tfCount = sqlUnsignedComma(&s); -{ -int i; -s = sqlEatChar(s, '{'); -AllocArray(ret->tfList, ret->tfCount); -for (i=0; i<ret->tfCount; ++i) - { - ret->tfList[i] = sqlStringComma(&s); - } -s = sqlEatChar(s, '}'); -s = sqlEatChar(s, ','); -} -{ -int i; -s = sqlEatChar(s, '{'); -AllocArray(ret->bindVals, ret->tfCount); -for (i=0; i<ret->tfCount; ++i) - { - ret->bindVals[i] = sqlFloatComma(&s); - } -s = sqlEatChar(s, '}'); -s = sqlEatChar(s, ','); -} -*pS = s; -return ret; -} - -void transRegCodeProbeFree(struct transRegCodeProbe **pEl) -/* Free a single dynamically allocated transRegCodeProbe such as created - * with transRegCodeProbeLoad(). */ -{ -struct transRegCodeProbe *el; - -if ((el = *pEl) == NULL) return; -freeMem(el->chrom); -freeMem(el->name); -/* All strings in tfList are allocated at once, so only need to free first. */ -if (el->tfList != NULL) - freeMem(el->tfList[0]); -freeMem(el->tfList); -freeMem(el->bindVals); -freez(pEl); -} - -void transRegCodeProbeFreeList(struct transRegCodeProbe **pList) -/* Free a list of dynamically allocated transRegCodeProbe's */ -{ -struct transRegCodeProbe *el, *next; - -for (el = *pList; el != NULL; el = next) - { - next = el->next; - transRegCodeProbeFree(&el); - } -*pList = NULL; -} - -void transRegCodeProbeOutput(struct transRegCodeProbe *el, FILE *f, char sep, char lastSep) -/* Print out transRegCodeProbe. Separate fields with sep. Follow last field with lastSep. */ -{ -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->chrom); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->chromStart); -fputc(sep,f); -fprintf(f, "%u", el->chromEnd); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->name); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->tfCount); -fputc(sep,f); -{ -int i; -if (sep == ',') fputc('{',f); -for (i=0; i<el->tfCount; ++i) - { - if (sep == ',') fputc('"',f); - fprintf(f, "%s", el->tfList[i]); - if (sep == ',') fputc('"',f); - fputc(',', f); - } -if (sep == ',') fputc('}',f); -} -fputc(sep,f); -{ -int i; -if (sep == ',') fputc('{',f); -for (i=0; i<el->tfCount; ++i) - { - fprintf(f, "%g", el->bindVals[i]); - fputc(',', f); - } -if (sep == ',') fputc('}',f); -} -fputc(lastSep,f); -} - -/* -------------------------------- End autoSql Generated Code -------------------------------- */ -