a29d4413f74fc087d4c99df4bd91a3b81eb4c350
hiram
  Thu Sep 30 10:18:27 2021 -0700
correct error message text no redmine

diff --git src/hg/utils/automation/asmHubGc5Percent.pl src/hg/utils/automation/asmHubGc5Percent.pl
index f123400..6674c10 100755
--- src/hg/utils/automation/asmHubGc5Percent.pl
+++ src/hg/utils/automation/asmHubGc5Percent.pl
@@ -1,64 +1,64 @@
 #!/usr/bin/env perl
 
 use strict;
 use warnings;
 use FindBin qw($Bin);
 use lib "$Bin";
 use AsmHub;
 
 my $argc = scalar(@ARGV);
 
 if ($argc != 3) {
   printf STDERR "usage: asmHubGc5Percent.pl asmId asmId.names.tab buildDir\n";
   printf STDERR "where asmId is the assembly identifier,\n";
   printf STDERR "and   asmId.names.tab is naming file for this assembly,\n";
   printf STDERR "and   buildDir is the directory with bbi/asmId.gc5Base.bw.\n";
   exit 255;
 }
 
 my $asmId = shift;
 my $namesFile = shift;
 my $buildDir = shift;
 my $gc5Bw = "$buildDir/bbi/$asmId.gc5Base.bw";
 
 if ( ! -s $gc5Bw ) {
-  printf STDERR "ERROR: can not find CpG masked file:\n\t'%s'\n", $gc5Bw;
+  printf STDERR "ERROR: can not find gc5Base.bw file:\n\t'%s'\n", $gc5Bw;
   exit 255;
 }
 
 my $em = "<em>";
 my $noEm = "</em>";
 my $assemblyDate = `grep -v "^#" $namesFile | cut -f9`;
 chomp $assemblyDate;
 my $ncbiAssemblyId = `grep -v "^#" $namesFile | cut -f10`;
 chomp $ncbiAssemblyId;
 my $organism = `grep -v "^#" $namesFile | cut -f5`;
 chomp $organism;
 my $averageGC = `bigWigInfo $gc5Bw | egrep "mean:" | sed -e 's/mean: //;'`;
 chomp $averageGC;
 $averageGC = sprintf("%.2f", $averageGC);
 
 print <<_EOF_
 <h2>Description</h2>
 <p>
 The GC percent track shows the percentage of G (guanine) and C (cytosine) bases
 in 5-base windows on
 the $assemblyDate $em${organism}$noEm/$asmId/$ncbiAssemblyId genome assembly.
 High GC content is typically associated with gene-rich areas.  The average
 overall GC percent for the entire assembly is % $averageGC.
 </p>
 
 <p>
 This track may be configured in a variety of ways to highlight different
 aspects of the displayed information. Click the
 &quot;Graph configuration help&quot; link for an explanation of the
 configuration options.
 </p>
 
 <h2>Credits</h2>
 <p> The data and presentation of this graph were prepared by
 <a href="mailto:&#104;&#105;&#114;a&#109;&#64;&#115;&#111;&#101;
 .&#117;&#99;&#115;&#99;.&#101;&#100;u">Hiram Clawson</a>.
 </p>
 _EOF_
    ;