504757947a40dcf788df653a4e00d8ba64c873c1 galt Thu Sep 30 01:08:34 2021 -0700 updating default hg38 to p13 in dbsnp build utility diff --git src/hg/utils/automation/doBigDbSnp.pl src/hg/utils/automation/doBigDbSnp.pl index e7be690..447dda5 100755 --- src/hg/utils/automation/doBigDbSnp.pl +++ src/hg/utils/automation/doBigDbSnp.pl @@ -29,31 +29,31 @@ { name => 'mergeToChrom', func => \&doMergeToChrom }, { name => 'mergeChroms', func => \&doMergeChroms }, { name => 'fixHg19ChrM', func => \&doFixHg19ChrM }, { name => 'check', func => \&doCheck }, { name => 'bigBed', func => \&doBigBed }, { name => 'install', func => \&doInstall }, { name => 'cleanup', func => \&doCleanup }, ] ); # Files that must exist in $topDir: my $refSeqToUcsc = 'refSeqToUcsc.tab'; my $equivRegions = 'equivRegions.tab'; # Option defaults: -my $assemblyList = 'GRCh37.p13,GRCh38.p12'; +my $assemblyList = 'GRCh37.p13,GRCh38.p13'; my $dbHost = 'hgwdev'; my $bigClusterHub = 'ku'; my $smallClusterHub = 'hgwdev'; my $workhorse = 'hgwdev'; my $outRoot = 'dbSnp'; my $base = $0; $base =~ s/^(.*\/)?//; sub usage { # Usage / help / self-documentation: my ($status, $detailed) = @_; # Basic help (for incorrect usage): print STDERR "