dab60a7ef0dc81b9ef5992d26cced0a5b7fa1435
angie
  Tue Nov 2 12:59:25 2021 -0700
Helper script for running matOptimize on the cluster

diff --git src/hg/utils/otto/sarscov2phylo/kuRunMatOptimize.sh src/hg/utils/otto/sarscov2phylo/kuRunMatOptimize.sh
new file mode 100755
index 0000000..7e219b4
--- /dev/null
+++ src/hg/utils/otto/sarscov2phylo/kuRunMatOptimize.sh
@@ -0,0 +1,13 @@
+#!/bin/bash
+
+. ~/.bashrc
+conda activate usher
+
+set -beEu -x -o pipefail
+
+mpirun \
+    --mca btl vader,tcp,self \
+    --hostfile hostfile \
+    --prefix $CONDA_PREFIX \
+    --pernode \
+    /cluster/home/angie/github/usher/build.ku/matOptimize $*