10a26eb6cecb17fd722e6f9bad1656329f733c28 dschmelt Tue Nov 2 16:11:00 2021 -0700 Adding note about defined regions refs#28436 diff --git src/hg/makeDb/trackDb/human/dbSnp153Composite.html src/hg/makeDb/trackDb/human/dbSnp153Composite.html index 5398446..f489a79 100644 --- src/hg/makeDb/trackDb/human/dbSnp153Composite.html +++ src/hg/makeDb/trackDb/human/dbSnp153Composite.html @@ -426,32 +426,32 @@ <a href="https://genome-source.gi.ucsc.edu/gitlist/kent.git/blob/master/src/hg/lib/bigDbSnp.as" target=_blank>bigDbSnp.as</a> schema with the information necessary for filtering and displaying the variants, as well as a separate file containing more detailed information to be displayed on each variant's details page (<a href="https://genome-source.gi.ucsc.edu/gitlist/kent.git/blob/master/src/hg/lib/dbSnpDetails.as" target=_blank>dbSnpDetails.as</a> schema). <h2>Data Access</h2> <p> Since dbSNP has grown to include approximately 700 million variants, the size of the All dbSNP (153) subtrack can cause the <a href="../../cgi-bin/hgTables" target=_blank>Table Browser</a> and <a href="../../cgi-bin/hgIntegrator" target=_blank>Data Integrator</a> to time out, leading to a blank page or truncated output, -unless queries are restricted to a chromosomal region or -to a specific set of rs# IDs (which can be pasted/uploaded into the Table Browser), +unless queries are restricted to a chromosomal region, to particular defined regions, to a specific set +of rs# IDs (which can be pasted/uploaded into the Table Browser), or to one of the subset tracks such as Common (~15 million variants) or ClinVar (~0.5M variants). </p><p> For automated analysis, the track data files can be downloaded from the downloads server for <a href="http://hgdownload.soe.ucsc.edu/gbdb/hg19/snp/" target=_blank>hg19</a> and <a href="http://hgdownload.soe.ucsc.edu/gbdb/hg38/snp/" target=_blank>hg38</a>. <table class="descTbl"> <tr> <th colspan=3>file</th> <th>format</th> <th>subtrack</th> </tr> <tr> <td>dbSnp153.bb</td> <td><a href="http://hgdownload.soe.ucsc.edu/gbdb/hg19/snp/dbSnp153.bb" target=_blank>hg19</a></td>