f9c9ff4d1f24831e1957d6cbf4214072abfb4001 dschmelt Tue Nov 2 11:07:02 2021 -0700 staging jaspar 2022 track and mouse tracks refs #28322 diff --git src/hg/makeDb/doc/hg38/jaspar.txt src/hg/makeDb/doc/hg38/jaspar.txt index 16cb9ed..20b9db3 100644 --- src/hg/makeDb/doc/hg38/jaspar.txt +++ src/hg/makeDb/doc/hg38/jaspar.txt @@ -1,15 +1,25 @@ # JASPAR Track integration by Daniel 8/20/21 #trackDb copied in the hg19.txt makeDoc cd /hive/data/genomes/hg38/bed mkdir jaspar cd jaspar wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2018/hg38/JASPAR2018_hg38_all_chr.bb wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2020/JASPAR2020_hg38.bb mv JASPAR2020_hg38.bb JASPAR2020.bb mv JASPAR2018_hg38_all_chr.bb JASPAR2018.bb cd /gbdb/hg38 mkdir jaspar cd jaspar ln -s /hive/data/genomes/hg38/bed/jaspar/JASPAR2018.bb . ln -s /hive/data/genomes/hg38/bed/jaspar/JASPAR2020.bb . ############################################################################### + + +# JASPAR 2022 track addition by Daniel 10/11/21 +cd ~/kent/src/hg/makeDb/trackDb +# trackDb copied in the hg19.txt makeDoc +cd /hive/data/genomes/hg38/bed/jaspar +wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2022/JASPAR2022_hg38.bb +mv JASPAR2022_hg38.bb JASPAR2022.bb +cd /gbdb/hg38/jaspar +ln -s /hive/data/genomes/hg38/bed/jaspar/JASPAR2022.bb .