7b52d31632f9b473eba9939d2d30ce703e401553 hiram Fri Oct 29 15:58:44 2021 -0700 lastz chainNet on GCF_002742125.1 Ramboullet sheep refs #28409 diff --git src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra index cf0a235..3b96459 100644 --- src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra +++ src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra @@ -193,51 +193,88 @@ html chainNet track chainNetGCF_002742125.1Viewchain shortLabel Chain view chain visibility pack parent chainNetGCF_002742125.1 spectrum on track chainGCF_002742125.1 parent chainNetGCF_002742125.1Viewchain subGroups view=chain shortLabel Rambouillet sheep Chain longLabel Rambouillet sheep (Nov. 2017 GCF_002742125.1_Oar_rambouillet_v1.0) Chained Alignments type bigChain GCF_002742125.1 - bigDataUrl /gbdb/$D/bbi/chainNet/chainGCF_002742125.1.bb - linkDataUrl /gbdb/$D/bbi/chainNet/chainGCF_002742125.1Link.bb - html chainNet + bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCF_002742125.1.bb + linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCF_002742125.1Link.bb + + track chainSynGCF_002742125.1 + parent chainNetGCF_002742125.1Viewchain + subGroups view=chain + shortLabel Rambouillet sheep Chain + longLabel Rambouillet sheep (Nov. 2017 GCF_002742125.1_Oar_rambouillet_v1.0) Syntenic Chained Alignments + type bigChain GCF_002742125.1 + bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainSynGCF_002742125.1.bb + linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainSynGCF_002742125.1Link.bb + + track chainRBestGCF_002742125.1 + parent chainNetGCF_002742125.1Viewchain + subGroups view=chain + shortLabel Rambouillet sheep Chain + longLabel Rambouillet sheep (Nov. 2017 GCF_002742125.1_Oar_rambouillet_v1.0) Reciprocal Best Chained Alignments + type bigChain GCF_002742125.1 + bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainRBestGCF_002742125.1.bb + linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainRBestGCF_002742125.1Link.bb track mafNetGCF_002742125.1Viewnet shortLabel Net view net visibility full parent chainNetGCF_002742125.1 track netGCF_002742125.1 parent mafNetGCF_002742125.1Viewnet subGroups view=net shortLabel Rambouillet sheep mafNet longLabel Rambouillet sheep (Nov. 2017 GCF_002742125.1_Oar_rambouillet_v1.0) mafNet Alignment type bigMaf bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_002742125.1.net.bb summary /gbdb/$D/bbi/chainNet/$D.GCF_002742125.1.net.summary.bb speciesOrder GCF_002742125.1 html chainNet + track synNetGCF_002742125.1 + parent mafNetGCF_002742125.1Viewnet + subGroups view=net + shortLabel Rambouillet sheep mafNet + longLabel Rambouillet sheep (Nov. 2017 GCF_002742125.1_Oar_rambouillet_v1.0) Syntenic Net Alignment + type bigMaf + bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_002742125.1.synNet.bb + summary /gbdb/$D/bbi/chainNet/$D.GCF_002742125.1.synNet.summary.bb + speciesOrder GCF_002742125.1 + + track rbestNetGCF_002742125.1 + parent mafNetGCF_002742125.1Viewnet + subGroups view=net + shortLabel Rambouillet sheep mafNet + longLabel Rambouillet sheep (Nov. 2017 GCF_002742125.1_Oar_rambouillet_v1.0) Reciprocal Best Net Alignment + type bigMaf + bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_002742125.1.rbestNet.bb + summary /gbdb/$D/bbi/chainNet/$D.GCF_002742125.1.rbestNet.summary.bb + speciesOrder GCF_002742125.1 + ############################################################################## # GCA_018400075.1 - Zebrafish T5D - Danio rerio - taxId: 7955 - fish ############################################################################## track chainNetGCA_018400075.1 compositeTrack on shortLabel Zebrafish T5D Chain/Net longLabel Zebrafish T5D (May 2021 GCA_018400075.1_ASM1840007v1), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno noInherit on priority 100.1 color 0,0,0 altColor 100,50,0 @@ -404,49 +441,49 @@ track chainNetGCF_000349665.1iewchain shortLabel Chain view chain visibility pack parent chainNetGCF_000349665.1 spectrum on track chainGCF_000349665.1 parent chainNetGCF_000349665.1iewchain subGroups view=chain shortLabel Golden hamster Chain longLabel Golden hamster (Mar. 2013 (MesAur1.0/GCF_000349665.1) Chained Alignments type bigChain GCF_000349665.1 bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCF_000349665.1.bb - linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCF_000349665.1.Link.bb + linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCF_000349665.1Link.bb track chainSynGCF_000349665.1 parent chainNetGCF_000349665.1iewchain subGroups view=chain shortLabel Golden hamster synChain longLabel Golden hamster (Mar. 2013 (MesAur1.0/GCF_000349665.1) Syntenic Chained Alignments type bigChain GCF_000349665.1 bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainSynGCF_000349665.1.bb - linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainSynGCF_000349665.1.Link.bb + linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainSynGCF_000349665.1Link.bb track chainRBestGCF_000349665.1 parent chainNetGCF_000349665.1iewchain subGroups view=chain shortLabel Golden hamster rbChain longLabel Golden hamster (Mar. 2013 (MesAur1.0/GCF_000349665.1) Reciprocal Best Chained Alignments type bigChain GCF_000349665.1 bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainRBestGCF_000349665.1.bb - linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainRBestGCF_000349665.1.Link.bb + linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainRBestGCF_000349665.1Link.bb track mafNetGCF_000349665.1iewnet shortLabel Net view net visibility full parent chainNetGCF_000349665.1 track netGCF_000349665.1 parent mafNetGCF_000349665.1iewnet subGroups view=net shortLabel Golden hamster net longLabel Golden hamster (Mar. 2013 (MesAur1.0/GCF_000349665.1) Net Alignment type bigMaf bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_000349665.1.net.bb summary /gbdb/$D/bbi/chainNet/$D.GCF_000349665.1.net.summary.bb