8bc5f2734824f3c46de7cab1f48c9012c7146ff0 angie Wed Oct 20 14:41:56 2021 -0700 Increase single subtree size to 2000. There are >4M samples in the big tree; 1000 is just too few to get a good overview anymore. diff --git src/hg/hgPhyloPlace/phyloPlace.h src/hg/hgPhyloPlace/phyloPlace.h index ba176f93..8d0d10d 100644 --- src/hg/hgPhyloPlace/phyloPlace.h +++ src/hg/hgPhyloPlace/phyloPlace.h @@ -9,31 +9,31 @@ #include "linefile.h" #include "parsimonyProto.h" #include "phyloTree.h" #include "seqWindow.h" #include "trashDir.h" #define PHYLOPLACE_DATA_DIR "hgPhyloPlaceData" // Allow users to upload a lot of sequences, but put limits on how much detail we'll show and // how many custom tracks we'll create. #define MAX_SUBTREE_BUTTONS 5 #define MAX_SEQ_DETAILS 100 #define MAX_SUBTREE_CTS 10 // For usher's -K option (single subtree): -#define SINGLE_SUBTREE_SIZE "1000" +#define SINGLE_SUBTREE_SIZE "2000" #define NEXTSTRAIN_DRAG_DROP_DOC "https://docs.nextstrain.org/projects/auspice/en/latest/advanced-functionality/drag-drop-csv-tsv.html" #define OUTBREAK_INFO_URLBASE "https://outbreak.info/situation-reports?pango=" // usher now preprends "node_" to node numbers when parsing protobuf, although they're still stored // numeric in the protobuf. #define USHER_NODE_PREFIX "node_" struct treeChoices /* Phylogenetic tree versions for the user to choose from. */ { char **protobufFiles; // Mutation annotated tree files in protobuf format for UShER char **metadataFiles; // Sample metadata a la GISAID's nextmeta download option char **sources; // GISAID or public char **descriptions; // Menu labels to describe the options to the user