e7c438c709822b66b2cad226d2a58940823e7b00
hiram
  Fri Oct 22 14:06:41 2021 -0700
adding chainNet for golden hamster GCF_000349665.1 refs #28333

diff --git src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra
index 9072173..cf0a235 100644
--- src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra
+++ src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra
@@ -324,31 +324,31 @@
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCF_016699485.2.bb
         linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCF_016699485.2Link.bb
 
         track chainSynGCF_016699485.2
         parent chainNetGCF_016699485.2Viewchain
         subGroups view=chain
         shortLabel Chicken synChain
         longLabel Chicken (Jan. 2021 (GRCg7b/GCF_016699485.2)) Syntenic Chained Alignments
         type bigChain GCF_016699485.2
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainSynGCF_016699485.2.bb
         linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainSynGCF_016699485.2Link.bb
 
         track chainRBestGCF_016699485.2
         parent chainNetGCF_016699485.2Viewchain
         subGroups view=chain
-        shortLabel Chicken syChain
+        shortLabel Chicken rbChain
         longLabel Chicken (Jan. 2021 (GRCg7b/GCF_016699485.2)) Reciprocal Best Chained Alignments
         type bigChain GCF_016699485.2
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainRBestGCF_016699485.2.bb
         linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainRBestGCF_016699485.2Link.bb
 
     track mafNetGCF_016699485.2Viewnet
     shortLabel Net
     view net
     visibility full
     parent chainNetGCF_016699485.2
 
         track netGCF_016699485.2
         parent mafNetGCF_016699485.2Viewnet
         subGroups view=net
         shortLabel Chicken net
@@ -365,15 +365,109 @@
         longLabel Chicken (Jan. 2021 (GRCg7b/GCF_016699485.2)) Syntenic Net Alignment
         type bigMaf
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_016699485.2.synNet.bb
         summary /gbdb/$D/bbi/chainNet/$D.GCF_016699485.2.synNet.summary.bb
         speciesOrder GCF_016699485.2
 
         track rbestNetGCF_016699485.2
         parent mafNetGCF_016699485.2Viewnet
         subGroups view=net
         shortLabel Chicken rbestNet
         longLabel Chicken (Jan. 2021 (GRCg7b/GCF_016699485.2)) Reciprocal Best Net Alignment
         type bigMaf
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_016699485.2.rbestNet.bb
         summary /gbdb/$D/bbi/chainNet/$D.GCF_016699485.2.rbestNet.summary.bb
         speciesOrder GCF_016699485.2
+
+##############################################################################
+# GCF_000349665.1 - golden hamster - Gallus gallus - taxId: 9031 - birds
+##############################################################################
+track chainNetGCF_000349665.1
+compositeTrack on
+shortLabel Golden hamster Chain/Net
+longLabel Golden hamster (Mar. 2013 (MesAur1.0/GCF_000349665.1), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+group compGeno
+noInherit on
+priority 100.1
+color 0,0,0
+altColor 100,50,0
+type bed 3
+sortOrder view=+
+matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
+chainMinScore 5000
+chainLinearGap loose
+matrixHeader A, C, G, T
+otherDb GCF_000349665.1
+html chainNet
+
+    track chainNetGCF_000349665.1iewchain
+    shortLabel Chain
+    view chain
+    visibility pack
+    parent chainNetGCF_000349665.1
+    spectrum on
+
+        track chainGCF_000349665.1
+        parent chainNetGCF_000349665.1iewchain
+        subGroups view=chain
+        shortLabel Golden hamster Chain
+        longLabel Golden hamster (Mar. 2013 (MesAur1.0/GCF_000349665.1) Chained Alignments
+        type bigChain GCF_000349665.1
+        bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCF_000349665.1.bb
+        linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCF_000349665.1.Link.bb
+
+        track chainSynGCF_000349665.1
+        parent chainNetGCF_000349665.1iewchain
+        subGroups view=chain
+        shortLabel Golden hamster synChain
+        longLabel Golden hamster (Mar. 2013 (MesAur1.0/GCF_000349665.1) Syntenic Chained Alignments
+        type bigChain GCF_000349665.1
+        bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainSynGCF_000349665.1.bb
+        linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainSynGCF_000349665.1.Link.bb
+
+        track chainRBestGCF_000349665.1
+        parent chainNetGCF_000349665.1iewchain
+        subGroups view=chain
+        shortLabel Golden hamster rbChain
+        longLabel Golden hamster (Mar. 2013 (MesAur1.0/GCF_000349665.1) Reciprocal Best Chained Alignments
+        type bigChain GCF_000349665.1
+        bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainRBestGCF_000349665.1.bb
+        linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainRBestGCF_000349665.1.Link.bb
+
+    track mafNetGCF_000349665.1iewnet
+    shortLabel Net
+    view net
+    visibility full
+    parent chainNetGCF_000349665.1
+
+        track netGCF_000349665.1
+        parent mafNetGCF_000349665.1iewnet
+        subGroups view=net
+        shortLabel Golden hamster net
+        longLabel Golden hamster (Mar. 2013 (MesAur1.0/GCF_000349665.1) Net Alignment
+        type bigMaf
+        bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_000349665.1.net.bb
+        summary /gbdb/$D/bbi/chainNet/$D.GCF_000349665.1.net.summary.bb
+        speciesOrder GCF_000349665.1
+
+        track synNetGCF_000349665.1
+        parent mafNetGCF_000349665.1iewnet
+        subGroups view=net
+        shortLabel Golden hamster synNet
+        longLabel Golden hamster (Mar. 2013 (MesAur1.0/GCF_000349665.1) Syntenic Net Alignment
+        type bigMaf
+        bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_000349665.1.synNet.bb
+        summary /gbdb/$D/bbi/chainNet/$D.GCF_000349665.1.synNet.summary.bb
+        speciesOrder GCF_000349665.1
+
+        track rbestNetGCF_000349665.1
+        parent mafNetGCF_000349665.1iewnet
+        subGroups view=net
+        shortLabel Golden hamster rbestNet
+        longLabel Golden hamster (Mar. 2013 (MesAur1.0/GCF_000349665.1) Reciprocal Best Net Alignment
+        type bigMaf
+        bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_000349665.1.rbestNet.bb
+        summary /gbdb/$D/bbi/chainNet/$D.GCF_000349665.1.rbestNet.summary.bb
+        speciesOrder GCF_000349665.1