9e91874973c9983e2bc43514478ba4beb46cc38e
lrnassar
  Fri Oct 22 08:22:44 2021 -0700
Adding GRC Incident and NCBI RefSeq otto jobs, passed over from Hiram.

diff --git src/hg/utils/otto/otto.crontab src/hg/utils/otto/otto.crontab
index e16746f..e51ff08 100644
--- src/hg/utils/otto/otto.crontab
+++ src/hg/utils/otto/otto.crontab
@@ -1,65 +1,74 @@
 #Below is the otto crontab active in the otto-meister's own cron
 #Changes here must be copied over by the current otto-meister
 
 #######################################################
 ###################### OTTO ###########################
 #######################################################
 
 SHELL=/bin/sh
 PATH=/cluster/bin/scripts:/cluster/bin/x86_64:/usr/local/bin:/bin:/usr/bin
 MAILTO=lrnassar@ucsc.edu
 
 #ISCA - Deprecated
 31 4 * * *  /hive/data/outside/otto/isca/iscaWrapper.sh 2>&1
 
 #OMIM
 MAILTO=max@soe.ucsc.edu,lrnassar@ucsc.edu
 17 4 * * *  /hive/data/outside/otto/omim/omimWrapper.sh 2>&1
 
 #Update check
 MAILTO=lrnassar@ucsc.edu
 0 5 1 */3 * mail -s "OMIM/GWAS CHECK - DID DBSNP UPDATE?" lrnassar@ucsc.edu < /cluster/home/chmalee/crontabs/dbSnpCheck.txt
 
 #DECIPHER
 #11 4 * * *  /hive/data/outside/otto/decipher/decipherWrapper.sh
 
 #GWAS Catalog
 41 4 * * 3  /hive/data/outside/otto/gwas/gwasWrapper.sh
 
 #GeneReviews
 00 8 * * 2 /hive/data/outside/otto/geneReviews/geneReviewsWrapper.sh
 
 #LRG
 57 9 1 * * /hive/data/outside/otto/lrg/lrgWrapper.sh
 
 #ClinVar
 MAILTO=max@soe.ucsc.edu,lrnassar@ucsc.edu
 08 00 8 * * umask 002; /hive/data/outside/otto/clinvar/doUpdate.sh
 
 #LOVD
 14 13 * * mon /hive/data/outside/otto/lovd/doUpdate.sh
 
 #User annotations
 #* * * * * ~max/miniconda3/envs/py3/bin/python ~max/usr/scripts/tsvSafeToBigBed /cluster/home/max/.user-annots-browser-track-c513a43ffff8.json https://docs.google.com/spreadsheets/d/1l38ypTcQH2AP2hlBmQ7kIXz1G4e33RPX-iFH1vu-utU/edit#gid=0 ~max/public_html/userAnnots/public.bb
 
 #Mastermind
 MAILTO=max@soe.ucsc.edu,lrnassar@ucsc.edu
 05 8 8  */3 * /hive/data/outside/otto/mastermind/buildMastermind.sh
 #
 #dbVar
 MAILTO=lrnassar@ucsc.edu
 13 8 2 * * /hive/data/outside/otto/dbVar/dbVarWrapper.sh
 
 #OMIM Upload
 HGDB_CONF=/cluster/home/lrnassar/.hg.conf.beta
 MAILTO=lrnassar@ucsc.edu
 15 05 * * *  /hive/data/outside/otto/omim/omimUploadWrapper.sh
 
 #ClinGen
 MAILTO=abenet@ucsc.edu,lrnassar@ucsc.edu
 00 9 * * * /hive/data/outside/otto/clinGen/clinGenWrapper.sh
 
 #wuhCor1 uniprot otto cron by Max, May 2021
 MAILTO=max@soe.ucsc.edu,lrnassar@ucsc.edu
 00 4 * * * /hive/data/outside/otto/uniprot/covidCheck.sh
 
+#GRC Incident
+MAILTO=lrnassar@ucsc.edu,hiram@soe.ucsc.edu
+33 09 * * * /hive/data/outside/grc/incidentDb/runUpdate.sh makeItSo
+
+#NCBI RefSeq
+MAILTO=lrnassar@ucsc.edu,hiram@soe.ucsc.edu
+23 8 * * 3 /hive/data/outside/ncbi/genomes/ncbiRefSeq/ottoNcbiRefSeq.sh
+
+#Format: Minute - Hour - DayofMonth month Day-of-week