d5cc9995f1311fb06dd8291222c892da6084f4d6
max
  Tue Oct 19 07:31:47 2021 -0700
now that LOVD has fixed their server, can remove the hacks again, no redmine, email with Lou

diff --git src/hg/utils/otto/lovd/download.sh src/hg/utils/otto/lovd/download.sh
index bb40cc7..7365922 100755
--- src/hg/utils/otto/lovd/download.sh
+++ src/hg/utils/otto/lovd/download.sh
@@ -1,34 +1,34 @@
 #!/bin/sh -e
 #	Do not modify this script, modify the source tree copy:
 #	src/utils/lovd/check.sh
 #	This script is used via a cron job 
 
 #	cron jobs need to ensure this is true
 umask 002
 
 WORKDIR="/hive/data/outside/otto/lovd"
 #	this is where we are going to work
 if [ ! -d "${WORKDIR}" ]; then
     echo "ERROR in lovd release, Can not find the directory: ${WORKDIR}" 
     exit 255
 fi
 
 cd "${WORKDIR}"
 
 today=`date +%F`
 mkdir -p $today
 cd $today
 
 # http request needs to come from hgwdev IP address otherwise file not found error
 for db in hg38 hg19
 do
-    ~max/miniconda3/bin/curl -s 'https://varcache.lovd.nl/bed/'${db}'?add_id_ncbi=1&add_annotation=1' | \
+    curl -s 'https://varcache.lovd.nl/bed/'${db}'?add_id_ncbi=1&add_annotation=1' | \
         grep -v track | grep -v ^$ | sed -e s/^/chr/g | \
         tawk '{gsub(";",FS,$6); gsub("effect:|lovd_count:","",$6); print }' | \
         sort -k1,1 -k2,2n > lovd.${db}.bed
         lcount=`wc -l lovd.${db}.bed |  cut -d' ' -f1 `
         if [ $lcount -lt "10000" ] ; then
                 echo LOVD file lovd.${db}.bed is too small
                 exit 1
         fi
 done