436dedc0123ecccf59296615c87beccb3ecdb8bd dschmelt Tue Oct 26 17:55:03 2021 -0700 Updating query examples with new ones and removing an old broken one refs #28072 diff --git src/hg/htdocs/goldenPath/help/query.html src/hg/htdocs/goldenPath/help/query.html index 8ecbd8b..656eaf1 100755 --- src/hg/htdocs/goldenPath/help/query.html +++ src/hg/htdocs/goldenPath/help/query.html @@ -51,53 +51,61 @@
Below is a list of examples that might be used to query the Genome Browser. Note that not every query listed here will produce a result in every assembly. The list serves only to illustrate the different types of queries that can be performed.
Query | Genome Browser Response |
---|---|
chr7 | Displays all of chromosome 7 |
chr3:1-1000000 | Displays the first million bases of chromosome 3, counting from the p-arm telomere |
3:1-1000000 | +Displays the first million bases of chromosome 3, Ensembl format chromosome names |
chr3 0 1000000 | +Displays the first million bases of chromosome 3; BED format |
NC_000007.14:1-1000000 | +Displays the first million bases of chromosome 3, RefSeq format |
CM000665.2:1-1000000 | +Displays the first million bases of chromosome 3, GenBank/INSDC format |
chr3:1000000+2000 | Displays a region of chromosome 3 that spans 2000 bases, starting with position 1000000 |
chrUn_GL000213v1 | Displays all of the unplaced contig GL000213v1 |
chr3_GL000221v1_random | Displays the unlocalized contig GL000221v1 |
chr1_KN196472v1_fix | Displays all of patch fix KN196472v1 |
20p13 | Displays the region for band p13 on chromosome 20 |
GTATGTAGCCACGGAGCACCATTACCTGTCACCATTACCTGAATGGCTA | -Displays the first best match to this DNA sequence, e.g. chr21:33034835-33034883 for hg19 | -
374180 | -Displays the region containing Entrez Gene identifier 374180 | Displays the first best match to this DNA sequence, e.g. chr21:33034835-33034883 for hg19 |
AA205474 | Displays the region containing the EST with GenBank accession AA205474 in the BRCA1 cancer gene on chromosome 17 |
AC008101 | Displays the region containing the clone with GenBank accession AC008101 |
AF083811 | Displays the region containing the mRNA with GenBank accession number AF083811 |
NM_017414 | Displays the region containing RefSeq identifier NM_017414 |
NP_059110 |