436dedc0123ecccf59296615c87beccb3ecdb8bd dschmelt Tue Oct 26 17:55:03 2021 -0700 Updating query examples with new ones and removing an old broken one refs #28072 diff --git src/hg/htdocs/goldenPath/help/query.html src/hg/htdocs/goldenPath/help/query.html index 8ecbd8b..656eaf1 100755 --- src/hg/htdocs/goldenPath/help/query.html +++ src/hg/htdocs/goldenPath/help/query.html @@ -51,53 +51,61 @@

Sample queries

Below is a list of examples that might be used to query the Genome Browser. Note that not every query listed here will produce a result in every assembly. The list serves only to illustrate the different types of queries that can be performed. + + + + + + + + + + + + - - - - - +
QueryGenome Browser Response
chr7 Displays all of chromosome 7
chr3:1-1000000 Displays the first million bases of chromosome 3, counting from the p-arm telomere
3:1-1000000Displays the first million bases of chromosome 3, Ensembl format chromosome names
chr3 0 1000000Displays the first million bases of chromosome 3; BED format
NC_000007.14:1-1000000Displays the first million bases of chromosome 3, RefSeq format
CM000665.2:1-1000000Displays the first million bases of chromosome 3, GenBank/INSDC format
chr3:1000000+2000 Displays a region of chromosome 3 that spans 2000 bases, starting with position 1000000
chrUn_GL000213v1 Displays all of the unplaced contig GL000213v1
chr3_GL000221v1_random Displays the unlocalized contig GL000221v1
chr1_KN196472v1_fix Displays all of patch fix KN196472v1
20p13 Displays the region for band p13 on chromosome 20
GTATGTAGCCACGGAGCACCATTACCTGTCACCATTACCTGAATGGCTADisplays the first best match to this DNA sequence, e.g. chr21:33034835-33034883 for hg19
374180Displays the region containing Entrez Gene identifier 374180
Displays the first best match to this DNA sequence, e.g. chr21:33034835-33034883 for hg19
AA205474 Displays the region containing the EST with GenBank accession AA205474 in the BRCA1 cancer gene on chromosome 17
AC008101 Displays the region containing the clone with GenBank accession AC008101
AF083811 Displays the region containing the mRNA with GenBank accession number AF083811
NM_017414 Displays the region containing RefSeq identifier NM_017414
NP_059110