436dedc0123ecccf59296615c87beccb3ecdb8bd dschmelt Tue Oct 26 17:55:03 2021 -0700 Updating query examples with new ones and removing an old broken one refs #28072 diff --git src/hg/htdocs/goldenPath/help/query.html src/hg/htdocs/goldenPath/help/query.html index 8ecbd8b..656eaf1 100755 --- src/hg/htdocs/goldenPath/help/query.html +++ src/hg/htdocs/goldenPath/help/query.html @@ -51,53 +51,61 @@ <h2>Sample queries</h2> <p> Below is a list of examples that might be used to query the Genome Browser. Note that not every query listed here will produce a result in every assembly. The list serves only to illustrate the different types of queries that can be performed. <table border="1"> <tr><th width="200">Query</th><th>Genome Browser Response</th></tr> <tr> <td>chr7</td> <td>Displays all of chromosome 7</td></tr> <tr> <td>chr3:1-1000000</td> <td>Displays the first million bases of chromosome 3, counting from the p-arm telomere</td></tr> <tr> + <td>3:1-1000000</td> + <td>Displays the first million bases of chromosome 3, Ensembl format chromosome names</td></tr> + <tr> + <td>chr3 0 1000000</td> + <td>Displays the first million bases of chromosome 3; BED format</td></tr> + <tr> + <td>NC_000007.14:1-1000000</td> + <td>Displays the first million bases of chromosome 3, RefSeq format</td></tr> + <tr> + <td>CM000665.2:1-1000000</td> + <td>Displays the first million bases of chromosome 3, GenBank/INSDC format</td></tr> + <tr> <td>chr3:1000000+2000</td> <td>Displays a region of chromosome 3 that spans 2000 bases, starting with position 1000000</td> </tr> <tr> <td>chrUn_GL000213v1</td> <td>Displays all of the unplaced contig GL000213v1</td></tr> <tr> <td>chr3_GL000221v1_random</td> <td>Displays the unlocalized contig GL000221v1</td></tr> <tr> <td>chr1_KN196472v1_fix</td> <td>Displays all of patch fix KN196472v1</td></tr> <tr> <td>20p13</td> <td>Displays the region for band p13 on chromosome 20</td></tr> <tr> <tr> <td>GTATGTAGCCACGGAGCACCATTACCTGTCACCATTACCTGAATGGCTA</td> - <td>Displays the first best match to this DNA sequence, e.g. chr21:33034835-33034883 for hg19</td> - </tr> - <tr> - <td>374180</td> - <td>Displays the region containing Entrez Gene identifier 374180</td></tr> + <td>Displays the first best match to this DNA sequence, e.g. chr21:33034835-33034883 for hg19</td></tr> <tr> <td>AA205474</td> <td>Displays the region containing the EST with GenBank accession AA205474 in the BRCA1 cancer gene on chromosome 17</td></tr> <tr> <td>AC008101</td> <td>Displays the region containing the clone with GenBank accession AC008101</td></tr> <tr> <td>AF083811</td> <td>Displays the region containing the mRNA with GenBank accession number AF083811</td></tr> <tr> <td>NM_017414</td> <td>Displays the region containing RefSeq identifier NM_017414</td></tr> <tr> <td>NP_059110</td>