276d219f7bb003efd10c060cf38f773b74cd4041 kuhn Sun Oct 31 15:57:33 2021 -0700 updating to remove completed workshops diff --git src/hg/htdocs/training/index.html src/hg/htdocs/training/index.html index b85338b..0fdfa33 100755 --- src/hg/htdocs/training/index.html +++ src/hg/htdocs/training/index.html @@ -1,432 +1,435 @@

Getting Help with the UCSC Genome Browser

Host a Genome Browser Workshop! Map

Do you suspect that there is a lot more to the Genome Browser than you have been using? Timeslots are available to host a Genome Browser workshop at your institution. Thanks to the funding support of NHGRI, we are able to offer hands-on Genome Browser training onsite at your institution at very affordable prices, tailored to your audience's level of expertise. Host — NOTE: virtual tutorials are available while coronavirus limits travel. Please use the Host link to contact us.

For more information or to submit a request to host a workshop, please visit our sign-up page.

Can't host? Catch one of our training sessions in your area:

- - + - - - + + - - +

October 14-16, 2021	Helix Biogen Institute Training Course. ~~Nigeria~~ -> virtual +	November 15, 2021	Primary Immune Deficiency Treatment Consortium (PIDTC) + Education Day. Asilomar
October 18, 2021	ASHG-sponsored - virtual Open House. Meet the Browser staff. Bring questions.	December 2, 2021	+ Molecular Biology Society of Japan + MBSJ virtual
October 29, 2021	- UCSF virtual +	January 8, 2022	Plant and Animal Genomics PAG XXIX. San Diego. + not virtual !
further:	- \| PIDTC - \| MBSJ - - \| PAG22 + \| UCLA \| ASHG + + \| Kansas City \| ESHG22

Online training and tutorials

Our video tutorials address some common questions we've gathered from our mailing list. Along the way we try to show you interesting features of the Browser you may not have found on your own.

Visit our YouTube channel or use the links below.

Video tutorials

Making Links, Part One: Understanding the URL. [transcript]
Making Links, Part Two: Jump into genes. [transcript]
Making Links, Part Three: Composites, custom tracks, spreadsheets. [transcript]
Coronavirus Basics: Coronavirus Browser SARS-CoV-2. [transcript]
Browser Basics, Part One: Getting around in the Browser. [transcript]
Browser Basics, Part Two: Configuring the Browser. [transcript]
Browser Basics, Part Three: Configuration + DNA navigation. [transcript]
Saving and sharing sessions in the Browser. [transcript]
Controlling visibility of data tracks in the Browser. [transcript]
Using the isPCR tool (isPCR) in the UCSC Genome Browser. [transcript]
dbSNP resources in the UCSC Genome Browser database. [transcript]
Using the UCSC Genome Browser Data Integrator. [transcript]

Video tutorials

Finding a list of genes in a region. [transcript]
Finding exon numbers. [transcript]
Finding all SNPs in a gene. [transcript]
Finding SNPs upstream from a gene. [transcript]
Find which tables belong to a data track. [transcript]
Identifying codon numbers in a gene. [transcript]
Obtaining exon coordinates and sequences. [transcript]
Multi-Region View: Exon-only display mode. [transcript]
Multi-Region View: Alternate haplotypes. [transcript]
Multi-Region View: Discontinuous regions. [transcript]
How-to: Genome Browser in the Cloud.
How-to: Genome Browser Gateway.

Other content produced at UCSC

See a collection of interesting Browser views in our Session Gallery
Nature: Guide to the UCSC Genome Browser
Fishing for genes in the UCSC Browser (pdf)
The UCSC genome browser and associated tools
UCSC genome browser tutorial
Step-by-step tutorial presented at ASHG 2009 annual meeting - basic browser navigation and functionality in the context of interpreting clinical genetics reports.
Step-by-step tutorial presented at ABRF 2010 annual meeting - how to convert files and display high-throughput sequencing results.
Step-by-step tutorial presented at ASHG 2014 annual meeting - includes Custom Tracks and Table Browser queries with and without filters.

External resources

Teaching bioinformatics and neuroinformatics by using free web-based tools - student-level tutorial that demonstrates the combined use of several major bioinformatic tools (including the UCSC Genome Browser) in answering a series of related research questions

User's guides for tools in the Genome Browser

Contact and mailing list information

Genome Browser contact information
Genome Browser mailing list (searchable interactive discussion forum)
Genome Browser FAQs

Mirroring and source code

Associated publications and announcements

Various Help pages for parts of the Genome Browser