daffd6b566cb5ba1182be543fe0890c679cce99f angie Mon Nov 29 15:48:14 2021 -0800 Added new lineages from pango-designation v1.2.103 (AY.34.1 broadened, new AY.34.1.1 is old AY.34.1). diff --git src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv index c16742f..7575036 100644 --- src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv +++ src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv @@ -25,75 +25,81 @@ AY.116.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > A10691G > C19160T > G20968A > G12071A AY.117 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A > C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > C28708T > C15810T AY.118 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > T826C AY.119 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > G19006T AY.120 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A > C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > C6408T AY.120.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A > C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > C6408T > A25003G > A10323N > C11095T AY.120.2 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A > C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > C6408T > A25003G > G174N > C21758T AY.120.2.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A > C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > C6408T > A25003G > G174N > C21758T > C7105T > T27017A > C13138T AY.121 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638N > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A > C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > C23557T > C13168T > G25996T AY.121.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638N > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A > C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > C23557T > C13168T > G25996T > G28396A > C16726T > C19859T > G29690N > T209N,C27737T AY.122 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G1048T AY.122.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G1048T > G20937T > C19983T > C23934T AY.123 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > C15738T > A7519C > G17790T,G27762T AY.124 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > A10323G > C21301A AY.125 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > G15906T > C745T +AY.126 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > A21137G AY.13 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C5184T > C1267T > C1191T > C9891T > T11418C > T12946C > A20262G > C27739T > C18176T > A18468G > A17406G AY.14 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C5184T > C1267T > C1191T > C9891T > T11418C > T12946C > A20262G > C27739T > C18176T > C19160T > G20718T AY.15 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C5184T > C1267T > C1191T > C9891T > T11418C > T12946C > A20262G > C27739T > C18176T > C19160T > A16872G,G27382C AY.16 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C5184T > C1267T > C1191T > C9891T > T11418C > T12946C > A20262G > C27739T > C18176T > A18468G > T26076A AY.16.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C5184T > C1267T > C1191T > C9891T > T11418C > T12946C > A20262G > C27739T > C18176T > A18468G > T26076A > C14913T > C8407T > A12417G,G12911A AY.17 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C5184T > C1267T > C1191T > C9891T > T11418C > T12946C > A20262G > C27739T > C18176T > A25562G > C14708T > A2240G > C17436T AY.18 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C5184T > C1267T > C1191T > C9891T > T11418C > T12946C > A20262G > C27739T > C18176T > A18468G > T23470C,C27807T AY.19 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C5184T > C1267T > C1191T > C9891T > T11418C > T12946C > A20262G > C27739T > C18176T > A25562G > G25019T,G25947T AY.2 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > T11418C > C9891T > C11514T > C5184T > A5584G > C13019T > C22227T > C2509T > G3701A > T3055C > C17336T,C18570T,G22813T AY.20 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > G24872T > C2061T AY.20.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > G24872T > C2061T > C8880T,G9190T > G29737N > C27393T > C11173T,G25481T AY.21 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > G29227T > C18166T > G25647A > G28195T,T28897C,C29167T AY.22 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > G24872T > G14209T > G22216T > T12496C,G26062T AY.23 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G25352T > C1404T > C4752T AY.23.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G25352T > C1404T > C4752T > A7537G,G17679T > C5497T,C12100T > C1263T > A14748G > C25262A +AY.23.2 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G25352T > C1404T > C4752T > C15960T > A20979G > T3718A,A11903G,A23667T AY.24 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > T11418C > C9891T > C11514T > C5184T > A5584G > C13019T > C22227T > C25702T AY.25 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G26107C > A27507C AY.26 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > T11418C > C9891T > C11514T > C5184T > A5584G > C13019T > C22227T > G25352T > A27345T AY.27 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > T11418C > C9891T > C11514T > C5184T > A5584G > C13019T > C22227T > T11938C > A14475G > G29422T AY.28 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > T11418C > C9891T > C11514T > C5184T > A5584G > C13019T > C22227T > C335T > C8950T,C9246T,G24794T AY.29 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > C5239T > T5514C AY.29.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > C5239T > T5514C > G22081T AY.3 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > A11456G AY.3.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > A11456G > G29050A > C29509T > C25339T > T23284C > C18115T > G3644T AY.30 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C5184T > C1267T > C1191T > C9891T > T11418C > T12946C > A20262G > C27739T > C20320T > C24745T > G29427A > C6539T > G28690T > C9319T > A13482G AY.31 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C5184T > C1267T > C1191T > C9891T > T11418C > T12946C > A20262G > C27739T > C20320T > C24745T > G29427A > C6539T > C14262T > C29358T > G17331T > T3306C,T23480C,G24872T AY.32 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C23277T > G24124A > C21304T > C9286T AY.33 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C22311T > A21647G AY.34 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053N > C8986T > A11332G > A11201G > C6402T > C21846T > G19563A,C26681T > G9441T > G18255T,G23593C -AY.34.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > G19563N,C26681T > G9441T > G18255T,G23593C > G26109A > C22498T,G27014T > C28961T > C25355T > G8017T +AY.34.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > G19563N,C26681T > G9441T > G18255T,G23593C > G26109A > C22498T,G27014T > C28961T +AY.34.1.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > G19563N,C26681T > G9441T > G18255T,G23593C > G26109A > C22498T,G27014T > C28961T > C25355T > G8017T +AY.34.2 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053N > C8986T > A11332G > A11201G > C6402T > C21846T > G19563A,C26681T > G9441T > G18255T,G23593C > G26109A > C22498T,G27014T > A14457G > C21110T > A19563G > C24138T > G11417T AY.35 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466N > T26767C > G15451N > C5184T > C1267T > C1191T > A17496G > T9678C > G9203A,C11005A > A20396G > A21792C > C6027A > C16915T > G23012C AY.36 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > G24872T > A20532G > C29738N > G18079T > T15628C AY.37 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > T11418C > C9891T > C11514T > C5184T > A5584G > C13019T > C22227T > C2509T > G2185T > T20911C AY.38 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > T11418C > C9891T > C11514T > C5184T > A5584G > C13019T > C22227T > C2509T AY.39 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > G27604A AY.39.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > G27604A > G21372T > A13482G AY.39.1.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > G27604A > G21372T > A13482G > G19563T AY.39.2 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > G27604A > G21372T > G24781C > C6883T > G5716T AY.4 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > C7851T AY.4.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > C7851T > T17040C > C2706T > T18927C > A20374C,G22899T AY.4.2 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > C7851T > T17040C > C25614T > C22227T > T21995C AY.4.2.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > C7851T > T17040C > C25614T > C22227T > T21995C > C18687T > C15720T > G28878T +AY.4.2.2 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > C7851T > T17040C > C25614T > C22227T > T21995C > G25352C AY.4.3 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > C7851T > C21638T AY.4.4 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > C7851T > G14209T > C22000T > G24348C AY.4.5 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > C7851T > G25337T > A14882C +AY.4.6 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > C7851T > T17040C > A28967G > C19524T > C16293T > C20404T AY.40 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C5184T > C1267T > C1191T > C9891T > T11418C > T12946C > A20262G > C27739T > C20320T > C24745T > G29427A > C6539T > G28690T > A1558G,A15892G > G2755T > C1912T,G23282T,T28297C > C28099T AY.41 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C18395T > G25062T > G9220A > A13712G > G7936T > A17236G > G2272T > G1820A,G22992T AY.42 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846T > C25872T AY.43 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > A28299T AY.43.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > A28299T > C15952A > C18744T > C24130T > C12663T,C25433T AY.43.2 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > A28299T > C15952A > C18744T > C24130T > G3728T AY.43.3 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > A28299T > C15952A > C18744T > C24130T > C19955T AY.43.4 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > A28299T > C15952A > C18744T > C24130T > C5241T AY.44 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C6040T AY.45 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C25207T > G13812T AY.46 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C10977T AY.46.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C10977T > T25673C AY.46.2 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C10977T > A17799G AY.46.3 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C10977T > G14186T > C19637T > G28378T AY.46.4 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C10977T > G23545T @@ -212,15 +218,16 @@ P.4 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G25088T > G1811A > C3177T,C11450A,C12880T > A136N,C9693T,T9867C,C12008T,A15932G,G18756T,T20745C,G21987N,T22917G,A23720G,G25540A,C25708T,A28271C,C28932T P.5 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G25088T > C24904T > G25906T > G5180A,G9929A,C21846T > G23012C,A23064C,C27807T,A28271T,C28311T P.6 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G25088T > C12053T > G21305A > G2534T > C1077T,C3736T,C7043T,C10029T,A14113G,C24382T > G23587C,C25665T > C8980T,G23593T P.7 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G25088T > C12053T > C17676T > C17172T,C25844T,C28311T C.37 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G10097A > C23731T > C4002T > C13536T > T7424G,T9867C,A28271T > C9857T > C10029T,C28311T > G21786T,C21789T > C7124T > T22917A,T23031C > C24138A > G28913T C.37.1 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G10097A > C23731T > C4002T > C13536T > T7424G,T9867C,A28271T > C9857T > C10029T,C28311T > G21786T,C21789T > C7124T > T22917A,T23031C > C24138A > G28913T > C29311T > C26894T > T11296G > A28877T > G28878C > C20806T B.1.621 C14408T > C241N > C3037T > A23403G > G25563T > C18877T > C28005T,C28093T > C27925A > A13057T,C23604A > A23063T > C6037T,G23012A > C10029T,A11451G,C20148T > C17491T,C21846T,C28887T > C4878T > A21993C,T21995A > T19035C,G22599A,A26492T > A3428G,A28272T B.1.621.1 C14408T > C241N > C3037T > A23403G > G25563T > C18877T > C28005T,C28093T > C27925A > A13057T,C23604A > A23063T > C6037T,G23012A > C10029T,A11451G,C20148T > C17491T,C21846T,C28887T > C4878T > A21993C,T21995A > T19035C,G22599A,A26492T > A3428G,A28272T > C17707T > C5192T > A6704G,T22384A > C9120T > C20402T > T29748N > C28657T > G26167T B.1.160 C14408T > C241N > C3037T > A23403G > G25563T > C26735T > C18877T > G28975C > T26876C > G29399A > C25710T > G9526T,G22992A > G5629T > C11497T B.1.1.315 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C29466T > C22388T,C26060T,A29771N > T3256C,C19718T > A1163T,G19542T B.1.1.232 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C6573T > G12191T > T16479C > T2537G B.1.1.529 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > G23012N > A23063T > T22882G,C22995A,A23013C,C23525T,C24130A > A2832N,T5386N,G8393N,C10029T,C10449A,A11537N,T13195N,C15240N,A18163G,C21762N,G22578A,T22673N,C22674T,T22679C,C22686N,G22813T,G22898N,G22992A,A23040G,G23048N,A23055G,T23075N,C23202N,T23599G,C23854N,G23948T,A24424N,T24469N,C24503N,C25000T,C25584T,C26270T,A26530N,C26577G,G26709A,A27259C,C27807T,A28271N,C28311N B.1.639 C14408T > C241N > C3037T > A23403G > G23012A > A28271G > T22020C,C22995A,C24138A,G24368T,T27919C,A28742G B.1.640 C14408T > C241N > C3037T > A23403G > G25563T > C28005N,C28093N > C27925N > A23063T,C23604A > C10029T,C28887T > A26492T > C601T,C1191T,A1620G,C2416T,C2455T,G6622T,G7328T,C9711T,G9756A,T11418C,C11956T,C16575T,C16869T,C20283T,C21588T,G21848C,G22132T,T22191C,A22600C,A22743G,T22907A,T23030C,T23031N,C24138A,G24368C,C25487T,T26767C,C27513T,C27807T,T29377C,G29405C,G29465N AA.1 C14408T > C241N > C3037T > A23403G > C6286T > C28932T > C22227T > G29645N > T445C > G21255C > C26801G > C5170T > G11132T > G22051T > C10078T > G11417T +XC C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > T22917G,C22995A > C7124T,G15451A,C16466T > C6402T > C21618G,C25469T > C23604G > C8986T,G9053T > C19220T,G28280C,A28281T,T28282A,C28977T > G4181T,C21846T,C27972T,G28048T,A28111G > G210N,C10029T,A11201G,A11332G,T26767C > C5239T,T5514C,G22081T,G27390T