120472125fdd62cce8e4cdea52508fe810953f0a dschmelt Fri Dec 3 14:07:21 2021 -0800 Announcing omicron VOC updated refs #28579 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index fb35503..d3f33d6 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -38,30 +38,57 @@ </ul> </div> <div class="col-sm-3"> <ul> <li><a href="#2005">2005 News</a></li> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2021 archived news ============= --> +<a name="120221"></a> +<h2>Dec. 3, 2021 Updated Variants of Concern SARS-CoV-2 track with Omicron</h2> +<p> +The Genome Browser has updated our <a href="/cgi-bin/hgTrackUi?db=wuhCor1&g=variantMuts"> +Variants of Concern</a> track to include the +latest WHO-designated variant of concern (VOC), Omicron B.1.1.529. This evolving virus has +been a challenge for everyone and we are humbled to continue providing public data +and our high-quality genetics research tools, now updated with the latest COVID +variant information.</p> +<p> +This update comes as two seperate subtracks to the Variants of Concern (VOC) track, one with amino +acid mutations sourced from <a href="https://cov-lineages.org/" target="_blank">cov-lineages.org</a> +and another with nucleotide mutations identified from +<a href="https://www.gisaid.org/" target="_blank">GISAID</a> sequences. These tracks +easily interface with our data filter and query tools including +<a href="/cgi-bin/hgTables">Table Browser</a> and our +<a href="../goldenPath/help/api.html">JSON API</a>. You can also +cross reference independent genetics data using our Custom Track and Track Hub options. +Feel free to contact +one of the <a href="../contacts.html">Genome Browser support emails</a> for any browser +related questions. View these new Omicron tracks on the +<a href="/cgi-bin/hgTracks?db=wuhCor1">SARS-CoV-2 Genome Browser</a> or +using this pre-formatted Saved Session:</p> + +<p> +<a href="https://genome.ucsc.edu/s/dschmelt/omicronAnnouncement">Omicron Session</a></p> + <a name="112421"></a> <h2>Nov. 24, 2021 New Genome Browser: Dog, canFam6 (<em>Canis lupus familiaris</em>)</h2> <p> A genome browser is now available for the <em>Canis lupus familiaris</em> assembly released in Oct. 2020 by the <a href="https://www.broadinstitute.org/scientific-community/science/projects/mammals-models/dog/dog-genome-links" target="_blank">Dog Genome Sequencing Consortium</a> (Dog10K_Boxer_Tasha). <h3>About the assembly:</h3> <ul> <li><b>UCSC Genome Browser assembly ID:</b> <a href="../../cgi-bin/hgGateway?db=canFam6" target="_blank">canFam6</a></li> <li><b>Sequencing/Assembly provider ID:</b> <a href="https://www.broadinstitute.org/scientific-community/science/projects/mammals-models/dog/dog-genome-links"> Dog Genome Sequencing Consortium</a></li> <li><b>Assembly date:</b> Oct. 2020</li> <li><b>Accession ID:</b> GCF_000002285.5</li> <li><b>NCBI Genome ID:</b> <a href="https://www.ncbi.nlm.nih.gov/genome/85"