2ec1b855bf15da994b011482b39f7a4306dc84a1
hiram
  Wed Dec 1 12:12:56 2021 -0800
update to run from /hive/data/outside/otto/ncbiRefSeq/ refs #28331

diff --git src/hg/utils/otto/ncbiRefSeq/runMm39.sh src/hg/utils/otto/ncbiRefSeq/runMm39.sh
index b005890..8cfee80 100755
--- src/hg/utils/otto/ncbiRefSeq/runMm39.sh
+++ src/hg/utils/otto/ncbiRefSeq/runMm39.sh
@@ -1,17 +1,17 @@
 #!/bin/bash
 
 set -beEu -o pipefail
 
-export TOP="/hive/data/outside/ncbi/genomes/ncbiRefSeq"
+export TOP="/hive/data/outside/otto/ncbiRefSeq"
 cd "${TOP}"
 
 export db="mm39"
 export Db="Mm39"
 export sumFile="prev${Db}.sum"
 export asmId="GCF_000001635.27_GRCm39"
 export dateStamp=`date "+%F"`
 export wrkDir="/hive/data/genomes/${db}/bed/ncbiRefSeq.${dateStamp}"
 export sumFile="${TOP}/prev${Db}.sum"
 export gffFile="/hive/data/outside/ncbi/genomes/GCF/000/001/635/GCF_000001635.27_GRCm39/GCF_000001635.27_GRCm39_genomic.gff.gz"
 
 ${TOP}/runUcscDb.sh "${db}" "${Db}" "${sumFile}" "${asmId}" "${wrkDir}" "${gffFile}"