2ec1b855bf15da994b011482b39f7a4306dc84a1 hiram Wed Dec 1 12:12:56 2021 -0800 update to run from /hive/data/outside/otto/ncbiRefSeq/ refs #28331 diff --git src/hg/utils/otto/ncbiRefSeq/runUcscDb.sh src/hg/utils/otto/ncbiRefSeq/runUcscDb.sh index 311a842..48d1d89 100755 --- src/hg/utils/otto/ncbiRefSeq/runUcscDb.sh +++ src/hg/utils/otto/ncbiRefSeq/runUcscDb.sh @@ -1,20 +1,20 @@ #!/bin/bash set -beEu -o pipefail -export TOP="/hive/data/outside/ncbi/genomes/ncbiRefSeq" +export TOP="/hive/data/outside/otto/ncbiRefSeq" cd "${TOP}" export db="$1" export Db="$2" export sumFile="$3" export asmId="$4" export wrkDir="$5" export gffFile="$6" export msgFile="/tmp/refSeqUpdateNotice.msg.txt" function prevCompleted() { printf "To: hclawson@ucsc.edu\n" > ${msgFile} printf "From: hiram@soe.ucsc.edu\n" >> ${msgFile} printf "Subject: $db ncbiRefSeq is not needed\n" >> ${msgFile} printf "\n" >> ${msgFile}