0e9604766086b49eecef30226e15cea726cc14b6
kent
  Wed Nov 24 14:03:14 2021 -0800
Updated usage message, which was missing a new column.

diff --git src/hca/hcaUnifyMatrix/hcaUnifyMatrix.c src/hca/hcaUnifyMatrix/hcaUnifyMatrix.c
index 2346a8b..422917a 100644
--- src/hca/hcaUnifyMatrix/hcaUnifyMatrix.c
+++ src/hca/hcaUnifyMatrix/hcaUnifyMatrix.c
@@ -17,32 +17,33 @@
 
 double emptyVal = -1;
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "hcaUnifyMatrix - Given a list of matrices on maybe different gene sets produce a unified matrix on one gene set\n"
   "usage:\n"
   "   hcaUnifyMatrix graph.txg inList.tsv outMatrix.tsv\n"
   "where\n"
   "   graph.txg is made with txBedToGraph on the mapping.beds in the input\n"
   "   inList.tsv has one line per input we are unifying.  It is tab separated with columns:\n"
   "       1 - name of input to add to column labels\n"
   "       2 - relative priority, lower numbers get attended to first in gene mapping\n"
-  "       3 - input mapping bed file, often result of gencodeVersionForGenes -bed output\n"
-  "       4 - input expression matrix file in tsv format\n"
+  "       3 - scale - number used to scale this input relative to others\n"
+  "       4 - input mapping bed file, often result of gencodeVersionForGenes -bed output\n"
+  "       5 - input expression matrix file in tsv format\n"
   "options:\n"
   "   -bed=mapping.bed\n"
   "   -empty=val - store val (rather than default -1) to show missing data\n"
   "   -trackDb=stanza.ra - save trackDb stanza here\n"
   "   -stats=stats.tsv - save merged stats file here\n"
   );
 }
 
 /* Command line validation table. */
 static struct optionSpec options[] = {
    {"bed", OPTION_STRING},
    {"empty", OPTION_DOUBLE},
    {"trackDb", OPTION_STRING},
    {"stats", OPTION_STRING},
    {NULL, 0},