536628bf043b0a4a78a396f82206f16048df0a45 kuhn Mon Nov 22 18:50:05 2021 -0800 clarifed description of adding a track via url, per conversation with Dan diff --git src/LICENSE src/LICENSE index a6af08a..6a7ad57 100644 --- src/LICENSE +++ src/LICENSE @@ -1,60 +1,60 @@ MIT The default license of this repository is the MIT License, but LICENSE files in subdirectories override the text of this LICENSE file for files in certain subdirectories. This allows us to keep all functionally related code together in the same repository. As a result, the code in this repository falls into three different license types: 1 OSI OPEN SOURCE: the default MIT license (below) applies to the large majority of the code. - this includes all code to build and use tools and libraries to - read and write the Genome Browser file formats, like bigBed and bigWig, and + read and write the Genome Browser file formats, such as bigBed and bigWig, and the command line tools for these, bedToBigBed, wigToBigWig and the tagStorm tools and the parasol job scheduler. - - code to build all other UCSC command line tools, like pslCDnaFilter, + - code to build all other UCSC command line tools, such as pslCDnaFilter, overlapSelect or featureBits and hundreds of others. - also, patched third-party code from open-source projects bundled for convenience, in src/htslib (MIT), and ./src/optimalLeaf (public domain, with attribution). 2 NON-COMMERCIAL UCSC: A non-commercial license from UC for the genome browser website code in selected subdirectories of src/hg, see src/hg/LICENSE and https://genome-store.ucsc.edu/ - for source code under directories in src/hg: cgilib das encode hgApi hgCollection hgFileSearch hgFileUi hgGateway hgGene hgGenome hgIntegrator hgPal hgPcr hgPhyloPlace hgPublicSessions hgSession hgSuggest hgTables hgTrackUi hgTracks hgVai hgc hubApi near visiGene liftOver 3 NON-COMMERCIAL Kent: A non-commercial license from Kent Informatics for the BLAT code in src/blat/ and src/jkOwnLib/, see http://www.kentinformatics.com/ - for source code under directories: src/blat/ and src/jkOwnLib See https://genome.ucsc.edu/license/ for more details and on how to obtain a license for (2) and (3) The first line of all LICENSE files specifies the license for all files in subdirectories under it in SPDX format. ---- MIT License Copyright (C) 2001 UC Regents Permission is hereby granted, free of charge, to any person or non-commercial entity obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.